Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2269 ATGGAAGGAGGAGCAATGATATCATCATCGGAGAACTCATCATCAAACTGCTTGTACAGAGAGTGCTTGAGAAACCATGCAGCCACCCTTGGCAGCTACGCCACCGACGGCTGCGGCGAGTTCACCCTCGACGACCCGGCCGGCAGCCTCCAATGCGCCGCCTGCGGCTGCCACCGGAACTTCCACCGGAAAGTGACGTGCCCGCCGCCATCGAGCAACATGAGGGACCTCAGCGAGCTGACGGAGTATTCGGGCGGCGGGGGAAGCGGCGGAGAGGGGAGGAGGAAGAGGTACAGGACGAAGTTCACGGTGGAGCAGAAGGAGAAGATGCTGGGGTTCGCGGAGAAGCTTGGGTGGAAGCTCCAGAGGAAGGAACTTGAGGGAGAGATTGAAGCGTTTTGCAGAAGTGTTGGTGTGAGTAGACAGGTTTTCAAGGTGTGGATGCATAACCATAAGAACTCTTGTTCTTCTAATGCTTCTGCTTCCAATGGCAATGCTTCCTCTCTCACCCAGTAA 516 0.564 MEGGAMISSSENSSSNCLYRECLRNHAATLGSYATDGCGEFTLDDPAGSLQCAACGCHRNFHRKVTCPPPSSNMRDLSELTEYSGGGGSGGEGRRKRYRTKFTVEQKEKMLGFAEKLGWKLQRKELEGEIEAFCRSVGVSRQVFKVWMHNHKNSCSSNASASNGNASSLTQ* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2269 171 MobiDBLite consensus disorder prediction 76 97 - -
Lja2g2269 171 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 14 159 - -
Lja2g2269 171 Pfam ZF-HD protein dimerisation region 17 66 IPR006456 -
Lja2g2269 171 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 65 IPR006456 -
Lja2g2269 171 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 159 - -
Lja2g2269 171 SUPERFAMILY Homeodomain-like 83 154 IPR009057 -
Lja2g2269 171 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 64 IPR006456 -
Lja2g2269 171 Gene3D - 80 159 - -
Lja2g2269 171 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 95 153 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2269 Lja-Chr2 26343908 26344423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2269 19 154 ZF-HD Transcription Factor Family AT4G24660 45.833 2.94e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja2g2269 ZF-HD_dimer 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2269 - - qsu:112019750 205.682