Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2254 ATGCCTCAGAATCTAATTCCTGATCTTTCACTGCACATTAGCCTCCCAAACAGTGCTCCATCTTCAATTTGCACAAATGAAAGGGATGATGATTCAGCCTTTGATATATGGAGATCTTCAGCTGAAGAAGAAGGTGAATATGGCTTCAAATCTCACAGTGATGGTTCAATCAAAGGTAGCAGTAACATAGAGCTGAGTCTAGGGAACCCCACAAGTACTACTCCCTCTGAAGCTGAGAGCCCCTGGAGGAGAAGTAGAAACTTTGTTAGAGCAACACAAGAGAGGCAAACAACAACAAATCATGGTGAGGTTTCAGAGGGTGTAAGAAGAGTTATAACAACACCCTTCAATGGAATCCCTTTTTATAATAGTAACAATTCCTCAACAGAGAGGGTTTCTTCTCTCTATGCACCACTTCCATTACCATACCCTTCTTGTTCCCCCAATAATGATGCTACTGTTGGGGGTGTAAGTGTAACTCCAATCTCAAGGTTTAATGGGATAACCATGGAGAATCTAAGACCTAATCAGCAATTTCAGTACTTGAACCATCATCATCATCATCAACAACAACTTCTTCATAATCATCATCAGAATCAGCAGCAGTTTGGGACTAATGGAGTGTCTGATTTTGCAAATGGATTTATGAGGTCAAGAATGTTCAATACTCCAAAGCTGCAAAGTAAGAGGAACATGAGGGCTCCAAGAATGCGTTGGACTAGCTCTCTTCACAATCGCTTTGTTCATGCTGTTGAGCTTCTTGGGGGCCATGAAAGGGCTACTCCAAAGTCAGTTCTGGAGTTGATGGATGTTAAAGATCTAAAACTTGCTCATGTCAAGAGCCACTTGCAGATGTATAGGACTGTTAAAAACACTGACAAGCCAGCAGCTTCCTCAGATGGAGATGAGGATTTCATATCCCTAACACCACCACCCATTAATCAAAGCAAGAACAATTATTTACCAAATCAAAGGGGTCCTCTAAATGCACCTCAAAGTCATGATGATATGGCCCACACTTCAAGTAATCTATGGGCTAATTCTTCTTCTTCCAGTATAGGAGAACGAATACAAGCGATTTCCCGGGATCTGGATGAGCTTAGTCGAGAAGAAAGCCTGTCATCTCAGCATATTGGAAAGCTTACCGAGGAAAGAAACTACATACAATCAAGAAGCTTCAAGGATCAAAGTTTAGCCTGTCAGAACCCAAGCTTGGAGTTCACCTTAGGAAGACCAAATTGGCACATCAATGAACATGCTTGA 1263 0.4173 MPQNLIPDLSLHISLPNSAPSSICTNERDDDSAFDIWRSSAEEEGEYGFKSHSDGSIKGSSNIELSLGNPTSTTPSEAESPWRRSRNFVRATQERQTTTNHGEVSEGVRRVITTPFNGIPFYNSNNSSTERVSSLYAPLPLPYPSCSPNNDATVGGVSVTPISRFNGITMENLRPNQQFQYLNHHHHHQQQLLHNHHQNQQQFGTNGVSDFANGFMRSRMFNTPKLQSKRNMRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLKLAHVKSHLQMYRTVKNTDKPAASSDGDEDFISLTPPPINQSKNNYLPNQRGPLNAPQSHDDMAHTSSNLWANSSSSSIGERIQAISRDLDELSREESLSSQHIGKLTEERNYIQSRSFKDQSLACQNPSLEFTLGRPNWHINEHA* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2254 420 MobiDBLite consensus disorder prediction 60 81 - -
Lja2g2254 420 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 4 420 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lja2g2254 420 MobiDBLite consensus disorder prediction 60 104 - -
Lja2g2254 420 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 4 420 - -
Lja2g2254 420 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 235 288 IPR006447 GO:0003677
Lja2g2254 420 Gene3D - 234 291 - -
Lja2g2254 420 MobiDBLite consensus disorder prediction 312 349 - -
Lja2g2254 420 SUPERFAMILY Homeodomain-like 232 289 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2254 Lja-Chr2 25933862 25944201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2254 214 415 G2-like Transcription Factor Family AT5G16560 50.228 9.18e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja2g2254 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2254 - - lang:109340070 424.861