Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2240 ATGGTGTTGGGTTGGAGAAGAAGGAAGAGTAGCAGCCACCATAAAAATTCAAGGCCTAAAGTTGAGTTGGAGATTCCCAATCACTTCAGGTGCCCAATTTCTCTTGATTTGATGAAGGATCCTGTAACATTGTCCACTGGAATCACCTATGATCGTGACAGTGTTGAAAAATGGTTTGATGATGGGAACTACACGTGCCCTGTTACAAACCAGATTGTGAAGAATTTTGACATGATCCCAAACCATTCTTTAAGGATGATGATTCAAGATTGGTGTGTGGCAAATAGGCAACATGGAGTTGAGAGAATCCCAACTCCAAGAACACCCATTAGCCCAATGGAAGTTTCTGATCTTCTTTTTCAAGTGAAGGCATCATCAAAGCGTTTTGATCAATATGGTTGTTTAGAATTGGTGCAGAAGATTGAGAGATTGGGAGCAGAGAGCGAGAGGAACAAGAAAATCATAGTGGACAATGGAGCACCGGGTGCATTAGCCTCAGCTTTTGATGCTTTTGCAAATGATTCTGTGGAGAGGAATGTTCTTGTTCTTGAAGAGATTCTGTCAGCACTGAATTGGATGTTTCCACTTCAGTTGGAGGCTCAGAAATCTCTGGGGTCTCAAGCTTCTTTAAATTGCATTGTTTGGTTTTTGAAGCACCAAGATCTTCAGGGGAAAGAGAAATCCATTGTTGCATTGAAAGAGCTTCTCTCTTTTGGTGATGAGAACCATGTAAAGGCTCTCTCAGAGATTGAAGGAGCCAATGAGCTCTTGGTAGAGTTCATCAACAAGAGGATTAGCCCAAAAATCACAAAAGCTTCATTAAGAATAGTTTGGTACATGTGTAGTTCAAACTCTTCTAGTGAGAAGGTGAAATTGGCTTTTGTGGAATTGGGTTTGGTTTCTTCTCTTTTGGACATTCTCATTGACTCAGAAAAGAGCATGTGTGAGAAGGCTTTGGCTATCTTGGACTCTCTCTGCAGTATTGAAGAAGGGAGGGTGAAGGCTTGTGGTAATGATTTGACAATTCCTGTGTTGGTCAAGAAGCTGTTGAGAGTCTCTGCATTGAGCACAGGGTACTCTGTTTCTGCTATGTGGAAGCTGTGCAAGTTTGGAGAGAAAAAAGATGATGATGATGAAGGGAGAGTTTTGGTTGAGGCACTTCAAGTTGGTGCCTTTCAGAAGCTCTTGTTGGTGCTGCAAGTTGGTTGTACTGAGGAGACCAAGGAGAGAGCAACTGAGCTTCTCAAACTGCTGAATCCTTACAGGGCTGACTTGGAATGCATAGACTCAGATTTCAAGAATCTCAAGAGATCATTTTAA 1320 0.4197 MVLGWRRRKSSSHHKNSRPKVELEIPNHFRCPISLDLMKDPVTLSTGITYDRDSVEKWFDDGNYTCPVTNQIVKNFDMIPNHSLRMMIQDWCVANRQHGVERIPTPRTPISPMEVSDLLFQVKASSKRFDQYGCLELVQKIERLGAESERNKKIIVDNGAPGALASAFDAFANDSVERNVLVLEEILSALNWMFPLQLEAQKSLGSQASLNCIVWFLKHQDLQGKEKSIVALKELLSFGDENHVKALSEIEGANELLVEFINKRISPKITKASLRIVWYMCSSNSSSEKVKLAFVELGLVSSLLDILIDSEKSMCEKALAILDSLCSIEEGRVKACGNDLTIPVLVKKLLRVSALSTGYSVSAMWKLCKFGEKKDDDDEGRVLVEALQVGAFQKLLLVLQVGCTEETKERATELLKLLNPYRADLECIDSDFKNLKRSF* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2240 439 CDD RING-Ubox_PUB 29 71 IPR045210 -
Lja2g2240 439 Pfam U-box domain 25 96 IPR003613 GO:0004842|GO:0016567
Lja2g2240 439 SUPERFAMILY RING/U-box 15 101 - -
Lja2g2240 439 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Lja2g2240 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 103 IPR013083 -
Lja2g2240 439 PANTHER WDSAM1 PROTEIN 8 439 IPR045185 GO:0061630
Lja2g2240 439 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Lja2g2240 439 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 439 - -
Lja2g2240 439 Gene3D - 120 418 IPR011989 -
Lja2g2240 439 SUPERFAMILY ARM repeat 181 386 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2240 Lja-Chr2 25792541 25794416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2240 5 439 U-box Gene Family AT5G37490 42.568 4.59e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2240 - - gmx:100794340 682.945