Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2235 ATGCCCACCTTCACTCCTGCATCAGTGTCAGCATTTCTGTTCAACTGGGTTCATGCGGTTGCAATAATGAAACGTGTTCGGCACCCAAATGTGGTGCTCTTCATGGGTGCAGTTACGAAATGTCCCCATCTATCAATAGTGACAGAGTATTTGCCTAGGGGTAGTTTATATCGTCTGATACATAGGCCGGCATCTGGTGAAATACTGGACCACAGAAGAAGATTACGGGTGGCTTTGGATGTGGCTAAAGGGATCAATTATCTCCATTGCCTGAAACCTCCAATTGTGCACTGGGATCTCAAATCTCCAAATTTGCTAGTTGACAAAAATTGGACAGTGAAGGTTTGTGATTTTGGATTGTCCAGATTTAAGGCAAACACTTTCATACCGTCAAAATTTGTTGCTGGAACACCTGAGTGGATGGCTCCAGAATTTCATCGTGGAGAACCTTCAAATGAGAAATCTGATGTATACAGTTTTGGAGTAATCTTGTGGGAACTCGTGACCATGCAACAACCATGGAGTGGACTTAGCCCTCCACAGGTAATTGGAGTTGTTGCTTTCCAGAATAGGAGGCTCGCTATCCCTCCAAACATCTCCCCTGCTTATGCCATACAATATCAGTTTTGTCTACAGTAA 639 0.4397 MPTFTPASVSAFLFNWVHAVAIMKRVRHPNVVLFMGAVTKCPHLSIVTEYLPRGSLYRLIHRPASGEILDHRRRLRVALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFIPSKFVAGTPEWMAPEFHRGEPSNEKSDVYSFGVILWELVTMQQPWSGLSPPQVIGVVAFQNRRLAIPPNISPAYAIQYQFCLQ* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2235 212 Gene3D Phosphorylase Kinase; domain 1 7 55 - -
Lja2g2235 212 SMART serkin_6 4 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2235 212 SUPERFAMILY Protein kinase-like (PK-like) 15 211 IPR011009 -
Lja2g2235 212 Pfam Protein tyrosine and serine/threonine kinase 17 202 IPR001245 GO:0004672|GO:0006468
Lja2g2235 212 Gene3D Transferase(Phosphotransferase) domain 1 56 212 - -
Lja2g2235 212 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 17 210 - -
Lja2g2235 212 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 17 210 - -
Lja2g2235 212 ProSiteProfiles Protein kinase domain profile. 1 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2235 212 ProSitePatterns Serine/Threonine protein kinases active-site signature. 95 107 IPR008271 GO:0004672|GO:0006468
Lja2g2235 212 CDD STKc_MAP3K-like 20 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2235 Lja-Chr2 25738163 25739766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2235 15 210 MAP Kinase Kinase Kinase AT4G24480 81.633 1.16e-115 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lja2g2235 PK_Tyr_Ser-Thr 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2235 - - gmx:100808435 358.992