Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2232 ATGGCCGTCGTCCGCCACCGCCGTCAACCCAACCTCCGCCTCCCGGAGCTCTCCGACCACCGCCCCCGCTTCACTCTCCCTCTCGCCCCCACCACAACCTTCAAATCCTCCTCCGCCACCACCTCTACCACCGCCGGAGATGCCATCGTCCCCGGCGACATTGAAAAGCTCGCCGTCCTCGGCAACGGCAACGGCGGCACCGTCTACAAAGTCCACCACAAGCCCACCTCCACCATCTACGCTCTAAAAGTCGTCCACACCGGCTCCGACCCCACCACGCGCCGCCGTACCTTCGCCGAAATCAACATCCTCCGCCGCGCCTCCGACTGCCCCCACGTCGTCCGGTACCACGGCTCCTTCGAAAAACCCTCCGGCGACGTCGCAATCCTCATGGAATACATGGAATCCGGCACCCTAGAATCCACCCTTCAATCCCACGGCACGTTCTCCGAACAACAACTCGCCGCGGTGGCGCGTGACGTCCTCCACGGCGTCGCGTACCTCCACGCGCGCAACATCGCCCACCGCGACATCAAGCCGGCAAACCTTCTCATTAACAGCAAAAATGAAGTTAAGATAGCTGACTTCGGTGTTAGTAAGCTCATGTGCCGCACGCTTGAAGCGTGTAACTCCTACGTCGGCACGTGCGCGTACATGAGCCCCGAACGGTTCGACCCGGAAGCTTCTGGCGGGAATTATAACGGTTTTGCTGCTGATATTTGGAGCTTGGGTTTGACCCTGTTTGAACTCTATGTGGGTCATTTTCCATTTCTTCAAGCGGGTCAGAGACCCGATTGGGTTACCTTAATGTGTGGAATTTGCTTCGGCGACCCGCCGAGCCTCCCGGAGACCGCGTCGCCGGAGTTTCGTAGCTTTGTCGAATGCTGCCTTAAGAAGGAGTCCGGTGAGAGGTGGACGGCGGCTCAGCTGTTGGCCCACCCGTTTGTTTGTAAAGACCCGGGAACTTGTTAA 972 0.5936 MAVVRHRRQPNLRLPELSDHRPRFTLPLAPTTTFKSSSATTSTTAGDAIVPGDIEKLAVLGNGNGGTVYKVHHKPTSTIYALKVVHTGSDPTTRRRTFAEINILRRASDCPHVVRYHGSFEKPSGDVAILMEYMESGTLESTLQSHGTFSEQQLAAVARDVLHGVAYLHARNIAHRDIKPANLLINSKNEVKIADFGVSKLMCRTLEACNSYVGTCAYMSPERFDPEASGGNYNGFAADIWSLGLTLFELYVGHFPFLQAGQRPDWVTLMCGICFGDPPSLPETASPEFRSFVECCLKKESGERWTAAQLLAHPFVCKDPGTC* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2232 323 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Lja2g2232 323 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 3 320 - -
Lja2g2232 323 SMART serkin_6 54 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2232 323 CDD PKc_MAPKK_plant_like 53 316 - -
Lja2g2232 323 SUPERFAMILY Protein kinase-like (PK-like) 51 317 IPR011009 -
Lja2g2232 323 Gene3D Transferase(Phosphotransferase) domain 1 137 321 - -
Lja2g2232 323 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 3 320 - -
Lja2g2232 323 Gene3D Phosphorylase Kinase; domain 1 29 135 - -
Lja2g2232 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Lja2g2232 323 ProSiteProfiles Protein kinase domain profile. 54 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2232 323 Pfam Protein kinase domain 55 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2232 Lja-Chr2 25692182 25693458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2232 1 316 MAP Kinase Kinase Gene Family AT1G18350 57.680 1.30e-127 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Lja2g2232 Pkinase 4.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2232 K20604 - gmx:100804100 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2232 2 25692182 25693458 Lja2g2232 2 25692182 25693458 ECH