Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2229 ATGAGCTTGCAATCTCGAAGAGAACGGAGGGATCGACCTAGGGTTCCATCACAAGCTGCTGCTGCTGCTGCTCCTCGTCAGCAATGGGTTCCCAGAGGGAGTGCAGCAGGAGGAGGAGCATCATCCAACAACACTGTTCTGCCGCCGCAGCCATCCATTTCAATTCCTCATCCATATCAGAATGCTGTTGCTGCTGGTTCCTCCGATCAAGGGGTTGCTGCTGCTGTGGCTGCGGCTGCTCCACCGGCTGCGGCTCACCGTAGAAACAATCAGAAGGTGGAAAGGGAGAGGGAGAGGGAGAGGGAGAGGGATAGAGGGAAAAGCAGGAATCAGCCGGGGAGGGAAGTGGGACTCAGAGACACTAGTTTGCCTCAGTTGGTGCAGGAGATTCAGGAGAAGCTGATGAGAGGAACTGTGGAATGCATGATTTGCTATGACATGGTTGGGAGGTCTGCGGCTATTTGGTCTTGCTCGAGCTGCTACTCAATTTTTCACCTGAGTTGCATCAAGAAGTGGGCACGGGCACCCACCTCGGTTGATTTGACGGCGGACAAGGATCAAGGGTTTAATTGGCGGTGTCCAGGTTGTCAATATGTGCAGCGGACGTCTCATAGGGAGATTAGGTATGTTTGCTTTTGTGGGAAGAGGCCAGACCCTCCTTCTGATTTATATCTGACACCGCATTCTTGTGGGGAGCCGTGTGGGAAGCCTCTTGAGAAGGAGGTGTTGGCTGCAGGAGGGAGAGAGGATGATCTTTGCCCTCATGTTTGTGTCTTGCAATGCCATCCAGGTCCTTGCCCTCCTTGTAAAGCATTTGCCCCTCCGCGCTTGTGCCCTTGTGGGAAGAAAAGAATCACCACCCGTTGTTCTGATCGGAAGTCTGTTCTTACCTGTGGCCAGTGCTGTGATAAGCTTCTTGAATGTGGACGGCATCGGTGTCAACAGACTTGTCATGTGGGTCCTTGCGGTCCTTGTCAGGTTTTGTTCAAGGCCTCTTGCTTTTGCAGTAAAACTACTGAGGTTCTTGGTTGTGGGGACATGGTGGTGAAAGGTGAATTGAAGGAAGAAGGTGGAGTTTTTTCTTGTAGTTCCAGCTGTGGGAAGAAACTTGGTTGTGGTAATCATGTTTGTAGTGATATGTGTCACCCAGGCAGTTGCGGGGAATGTGAGCTTTTACCAAGCCGGGTTAAGACATGCTGTTGCGGGAAGACAAGATTGGAGGTGGATCGTGAAAGTTGTTTGGATCCAATACCCACCTGCTCACAGGTATGTGACAAGCTTCTCCATTGCGGGAAACATACTTGTAAGGAGCATTGTCATGTTGGTGAGTGTCCTCCGTGTTTAGTTCTAGTTTCACAGAAATGTCGCTGTAGCTCCACTTCACGAACTGTGGAGTGCTTTAAGACAGTAATGGAGAATCAGATGTTTACCTGTGAAAAGCCTTGTGGGAGAAAAAAGAACTGTGGGAGGCATCGATGTAGTGAAAAGTGTTGTCCACTTTCTAATCCAAACAATAATTTAAGAGAGGGTTGGGATCCTCATTTTTGTTCAATGCCCTGTGGAAAGAAACTAAGATGTGGCCAGCATGCTTGTGAGTCATTGTGTCACAGTGGCCATTGCCCACCTTGTCTTGAAACGATATTCACTGATTTATCATGTGCTTGTGGTAGGACTTCAATTCCTCCTCCTCTTCCTTGTGGTACACCGCCTCCTTCATGTCAGCTTCCTTGTTCAGTTGCTCAGCCGTGTGGCCATGCAGGCTCTCATAGTTGCCATTTTGGAGACTGCATTCCTTGTCCAGTGCCAGTGGCTAAAGAATGTATTGGTGGGCATGTAGTTCTTAGAAATATACCCTGTGGCTCAAAGGATATCAGATGCAATAATCCATGTGGAAGGACCAGACAGTGTGGTTTACATGCATGCGGCAGAACATGTCACCCCCCACCTTGTGATAGTCTATCTGGTGGTGTGCAAGGTTTCCAAGCACCATGTGGCCAAACGTGCAGTGCTCCAAGGAGAGACTGCCGGCATACATGTATGGCTCCATGCCACCCTTCATCTCCTTGCCCTGATATAAAATGTGAATTCCCTGTTACAATCACTTGTTCTTGTGGCCGTATAACAGCAAGTGTTCCTTGTGATGCTGGTGGTAGCATTAGTAATTACAATGCTGATGCCATTCATGAAGCTTCCATTGTTCAAAAATTGCCTGTGCCACTTCAACCAGTTGATTCAAATGGCAGAAAAGTTCCCCTTGGACAAAGAAAGTTGATGTGTGATGAGGAATGTGCAAAGTATGAGCGTAAAAAGGTTCTTGCTGATGCTTTTGACATCACTTCAGGTCTGGATTCTCTCCATTTTGCTGAGAGCTCTGTTTCTGAATTGCTCTCTGATATGTTCAGACGTGATCCAAAATGGGTTTTAGCTGTGGAGGAGAGATGCAAATTTTTGGTACTTGGCAAGAGTAGAGGAACTACACATGGTTTAAAAGTCCATGTTTTTTGTCCTATGCTGAAAGATAAAAGAGATGCAGTGAGATTGATTGCTGAAAGATGGAAGCTTGCAGTGAACGCTGCTGGTTGGGAGCCAAAGCGGTTTATTGTAATATCTGTTACCCAAAAATCAAAAGCCCCAGCTCGCGTGCTAGGAGTTAAGGGCACCACAACATTGAACACACTCTTTCCTCCTGCATTTGATCCCTTGGTAGATATGGACCCTCGACTTGTTGTTTCATTTCCAGACTTACCAAGGGATGCTGATATTAGTGCTTTGGTGTTGAGATTTGGTGGTGAGTGTGAGCTTGTTTGGTTGAATGACAAGAATGCTTTAGCTGTTTTTCACGATCCTGCCCGAGCTGCAACTGCAATGAGGAGATTGGATCATGGAAAAGTTTATCAGGGCGCTGTGTCAGTCGTCCCAAATGCCGGGGCATCAGCGGCATCTTCAGCTACCAATGCTTGGGGAGGAACCGGGACAGTGAAAGAGGGAGGAGCTTTGACTGCATTGAAAGGTAATCCGTGGAAAAAAGCTGTGGTTCAAGAGGCTGGTCGGAAAGAAGATTCTTGGGGGGATGAAGAATGGGCTACTACTGGTTCTGCTAATATACAGCCATCTGTTTTGAAGAAAGCAGCTCCAATAACTGCTTCACTAAATCGTTGGAATGTCTTAAACCAGGAATCAAGTTCGAGTTCATCGGTTACAACAGGTAGAGCTGAAGTTTCTGGGAAACAGAAAGAAAGCAGTGCTGTCTCAAAGTCGGTGTCTGATGCAGGTGGCTCAAATGAAGAAGGGAAGCAACATGGAGATAATTCAGATGCAGCAGAGGTTCCTGAAGTAGTAGATGATTGGGAGAAGGCTTATGAATGA 3366 0.4747 MSLQSRRERRDRPRVPSQAAAAAAPRQQWVPRGSAAGGGASSNNTVLPPQPSISIPHPYQNAVAAGSSDQGVAAAVAAAAPPAAAHRRNNQKVERERERERERDRGKSRNQPGREVGLRDTSLPQLVQEIQEKLMRGTVECMICYDMVGRSAAIWSCSSCYSIFHLSCIKKWARAPTSVDLTADKDQGFNWRCPGCQYVQRTSHREIRYVCFCGKRPDPPSDLYLTPHSCGEPCGKPLEKEVLAAGGREDDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKRITTRCSDRKSVLTCGQCCDKLLECGRHRCQQTCHVGPCGPCQVLFKASCFCSKTTEVLGCGDMVVKGELKEEGGVFSCSSSCGKKLGCGNHVCSDMCHPGSCGECELLPSRVKTCCCGKTRLEVDRESCLDPIPTCSQVCDKLLHCGKHTCKEHCHVGECPPCLVLVSQKCRCSSTSRTVECFKTVMENQMFTCEKPCGRKKNCGRHRCSEKCCPLSNPNNNLREGWDPHFCSMPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLSCACGRTSIPPPLPCGTPPPSCQLPCSVAQPCGHAGSHSCHFGDCIPCPVPVAKECIGGHVVLRNIPCGSKDIRCNNPCGRTRQCGLHACGRTCHPPPCDSLSGGVQGFQAPCGQTCSAPRRDCRHTCMAPCHPSSPCPDIKCEFPVTITCSCGRITASVPCDAGGSISNYNADAIHEASIVQKLPVPLQPVDSNGRKVPLGQRKLMCDEECAKYERKKVLADAFDITSGLDSLHFAESSVSELLSDMFRRDPKWVLAVEERCKFLVLGKSRGTTHGLKVHVFCPMLKDKRDAVRLIAERWKLAVNAAGWEPKRFIVISVTQKSKAPARVLGVKGTTTLNTLFPPAFDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGKVYQGAVSVVPNAGASAASSATNAWGGTGTVKEGGALTALKGNPWKKAVVQEAGRKEDSWGDEEWATTGSANIQPSVLKKAAPITASLNRWNVLNQESSSSSSVTTGRAEVSGKQKESSAVSKSVSDAGGSNEEGKQHGDNSDAAEVPEVVDDWEKAYE* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2229 1121 MobiDBLite consensus disorder prediction 88 114 - -
Lja2g2229 1121 ProSiteProfiles Zinc finger RING-type profile. 141 197 IPR001841 -
Lja2g2229 1121 MobiDBLite consensus disorder prediction 1 15 - -
Lja2g2229 1121 Pfam NF-X1 type zinc finger 255 270 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 Pfam NF-X1 type zinc finger 636 651 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 Pfam NF-X1 type zinc finger 675 694 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 Pfam NF-X1 type zinc finger 430 447 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 Pfam NF-X1 type zinc finger 526 543 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 Pfam NF-X1 type zinc finger 308 326 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 Pfam NF-X1 type zinc finger 372 389 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 Pfam NF-X1 type zinc finger 488 499 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 CDD NF-X1-zinc-finger 420 466 - -
Lja2g2229 1121 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 99 1118 - -
Lja2g2229 1121 MobiDBLite consensus disorder prediction 1058 1121 - -
Lja2g2229 1121 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 99 1118 IPR034078 GO:0003700
Lja2g2229 1121 MobiDBLite consensus disorder prediction 74 122 - -
Lja2g2229 1121 CDD NF-X1-zinc-finger 230 291 - -
Lja2g2229 1121 SMART znfxneu3 488 522 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 SMART znfxneu3 583 601 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 SMART znfxneu3 253 271 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 SMART znfxneu3 636 666 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 SMART znfxneu3 308 327 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 SMART znfxneu3 526 545 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 SMART znfxneu3 430 449 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 SMART znfxneu3 675 696 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 SMART znfxneu3 372 391 IPR000967 GO:0005634|GO:0008270
Lja2g2229 1121 Coils Coil 83 103 - -
Lja2g2229 1121 SUPERFAMILY RING/U-box 130 200 - -
Lja2g2229 1121 MobiDBLite consensus disorder prediction 1058 1093 - -
Lja2g2229 1121 CDD RING-CH-C4HC3_NFX1 140 197 - -
Lja2g2229 1121 ProSiteProfiles Zinc finger PHD-type profile. 138 199 IPR019787 -
Lja2g2229 1121 MobiDBLite consensus disorder prediction 1095 1121 - -
Lja2g2229 1121 MobiDBLite consensus disorder prediction 1 59 - -
Lja2g2229 1121 CDD NF-X1-zinc-finger 298 346 - -
Lja2g2229 1121 CDD NF-X1-zinc-finger 362 408 - -
Lja2g2229 1121 CDD NF-X1-zinc-finger 516 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2229 Lja-Chr2 25616520 25620524 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Lja2g2229 zf-NF-X1 1.3e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2229 K12236 - gmx:100819219 1698.33