Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2218 ATGGGTTTTGGATCCCGCTGCTTCTGCTGTTGCTACTGCACAATCTACATGCTCATGTTCATGGTCATGATTGCCAGCATCATCTTCTGGATAATAATCTCCCCCTCAAGTGTCAAATTCCACATAACCGATGCATCGCTTACGCGCTTCAACCTCACAAGCGACCACAACCTGTATTACAATTTCAGGGTCAACATCACAGTTAGAAACCCCAATGACAACATCATAGTGTACTATAGGAGGATCACAGCAATTGCTTGGTACAAAGATAATGACTTTGCTTTTTTCAGTATAACACCCTTTGACCAAGGCCACAAGAACACCACATTCCTTGGGCCTGTGGTGTTTGAAGGGCAGAGTGTGATGAAGCTAGGATCTAAGCAACTTGCCGAGTACGCGGAAGAGTCACGTATGGGGATTTACACTGACTTGGCTGTGGATTTGGATCTTCGAATTAGAGCCAAGTATGGAAGGTTCAAGAGTAGCCGTTTTAATCCGCCCGTTGTGCAGTGTCGTCGCTTAAGAGTTCCTTTGATTATTTCTAATGGTAAATCACCACCTTCTTTCAATGTCACAAAATGTAGAACTGGTTATTTCTTTGCAGATCGTGATGCAGATGCAGGAGCCTGA 630 0.4429 MGFGSRCFCCCYCTIYMLMFMVMIASIIFWIIISPSSVKFHITDASLTRFNLTSDHNLYYNFRVNITVRNPNDNIIVYYRRITAIAWYKDNDFAFFSITPFDQGHKNTTFLGPVVFEGQSVMKLGSKQLAEYAEESRMGIYTDLAVDLDLRIRAKYGRFKSSRFNPPVVQCRRLRVPLIISNGKSPPSFNVTKCRTGYFFADRDADAGA* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2218 209 PANTHER OS05G0367900 PROTEIN 17 200 IPR044839 GO:0098542
Lja2g2218 209 Pfam Late embryogenesis abundant protein 65 164 IPR004864 -
Lja2g2218 209 PANTHER HARPIN-INDUCED 1 17 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2218 Lja-Chr2 25411235 25412478 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2218 32 185 SNARE and Associated Proteins AT1G32270 28.387 1.21e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2218 - - gmx:100784278 298.901