Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2217 ATGATGTATCAAATTCCTTCTTCTGCATCATCCATGTCATTCACCCACACACCACCATTCTCCAATGCATCATCACCACCTTCTTCTTCTTCCACTATCACTTTCGTCACCTATGCTAGATTCAGTGCCACCACAGCTTCCATGCTCCAGCACCGGACGGCAAGCCGTTTTCCCTTTTCTGCCACCAGGAACCGCCCCCGTGCGGCGGTGGCGGCGATTAGAGCCAAAGCTGAAACTGATTTCTACTCCACTTTGAATGTCAGCAGCAGTGCTACCCTTCAGGAAATCAAGAGCTCTTATCGGAAACTAGCTCGAAAGTATCATCCAGATATGAACAAATCCCCTGGGGCAGAGGACAAGTTCAAGGAGATTAGTGCTGCATATGAGGTCCTATCAGATGATGAGAAAAGATCTTTATATGATCGCTTTGGTGAGTCAGGTCTACAAGGAGAGAATGAAGGGCCAGCAAGTGCATCTGGGGTTGATCCTTTTGATTTATTCGAGGCATTCTTTGGTCGTTCAGATGGACTATTTGGAGATAGTGATGAAGGGGGCTTCAACTTCAATATGAGAAACAATAGAAACCGTGGCCAAGATATCCGGTATGACCTTCATTTGAGCTTTGAAGAATCAATTTTTGGAGGTCAGAGGGAGATTGAAGTTTCTTGTCTTCAGACATGTAATATTTGTGATGGTACAGGAGCTAAATCAAAGAGTTGCATTAAACAATGCACAAATTGTGGTGGCAGAGGAGGAGAAATGAGAAGTCAAAAAACACCCTTTGGAATGATGTCTCAGGTTTCTACCTGCTCTAAGTGTGGGGGTCTTGGAAAGATAATCACCGATCACTGTCGAAAATGTGATGGCAGTGGTCAGTTACAAGCTAAACGAACAATGGAAGTGGCCATTCCTCCTGGCCTCAACGATGGAGACACAATGCGAATTCGAGGAGAAGGGAATTATGATAAGAATAGGCGTAAAACTGGGGATCTTTTTGTGGTCCTCCATGTAGATGCAAAGCAAGGAGTTTGGAGAGAGGGTCTTCATTTATACTCAAAGATTAACATTGACTTCACAGAGGCAATACTGGGGTCAGTTAAAAAGGTAGAAACTGTTGAAGGTTCTAGGGATCTCCAAATTCCCTCTGGGATTCAACCTGGAGATTCAGTTAAGATCTCACGCTTGGGAGTTCCAGACATGAATAAACCATCTATTCGAGGCGATCATTTTTTCATTGTGAATGTTCTTATTCCTAAGGATATCAGTGGCACCGAACGTGTACTTGTTGAGCAGTTAGCTTCACTAAGAACACCCAGCAAAGGTGATTCAGCGGATCCTAAATGTGATGCTTCAACCAAGGGATTAAATTCAGTGTGGAGATCAATCACGAACTTCTTAAGGGGAGGACAATCTGAAGAAAGGTTTGCTTCAATTAGCCAGGATGCATCACATGCATCCTTGTGGAGATTCGGCCACCAAAATCATTCAGTCCCAGATTCCTTTTTTGTTATTTTCATTTTAACATTGATTTTTGCATCTATAGCAAAGTCTAAGAACTCATTGACCCAATACTTCATTAATAGAACACACAGTGAAAAATTTTGA 1605 0.4293 MMYQIPSSASSMSFTHTPPFSNASSPPSSSSTITFVTYARFSATTASMLQHRTASRFPFSATRNRPRAAVAAIRAKAETDFYSTLNVSSSATLQEIKSSYRKLARKYHPDMNKSPGAEDKFKEISAAYEVLSDDEKRSLYDRFGESGLQGENEGPASASGVDPFDLFEAFFGRSDGLFGDSDEGGFNFNMRNNRNRGQDIRYDLHLSFEESIFGGQREIEVSCLQTCNICDGTGAKSKSCIKQCTNCGGRGGEMRSQKTPFGMMSQVSTCSKCGGLGKIITDHCRKCDGSGQLQAKRTMEVAIPPGLNDGDTMRIRGEGNYDKNRRKTGDLFVVLHVDAKQGVWREGLHLYSKINIDFTEAILGSVKKVETVEGSRDLQIPSGIQPGDSVKISRLGVPDMNKPSIRGDHFFIVNVLIPKDISGTERVLVEQLASLRTPSKGDSADPKCDASTKGLNSVWRSITNFLRGGQSEERFASISQDASHASLWRFGHQNHSVPDSFFVIFILTLIFASIAKSKNSLTQYFINRTHSEKF* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2217 534 PRINTS DnaJ domain signature 82 100 IPR001623 -
Lja2g2217 534 PRINTS DnaJ domain signature 100 115 IPR001623 -
Lja2g2217 534 PRINTS DnaJ domain signature 136 155 IPR001623 -
Lja2g2217 534 PRINTS DnaJ domain signature 116 136 IPR001623 -
Lja2g2217 534 MobiDBLite consensus disorder prediction 1 30 - -
Lja2g2217 534 Gene3D - 197 333 - -
Lja2g2217 534 CDD DnaJ 80 133 IPR001623 -
Lja2g2217 534 SUPERFAMILY HSP40/DnaJ peptide-binding domain 345 425 IPR008971 GO:0006457|GO:0051082
Lja2g2217 534 ProSiteProfiles dnaJ domain profile. 80 144 IPR001623 -
Lja2g2217 534 ProSiteProfiles Zinc finger CR-type profile. 214 296 IPR001305 GO:0031072|GO:0051082
Lja2g2217 534 Gene3D DnaJ domain 76 181 IPR036869 -
Lja2g2217 534 Pfam DnaJ central domain 227 291 IPR001305 GO:0031072|GO:0051082
Lja2g2217 534 CDD DnaJ_C 198 421 - -
Lja2g2217 534 Gene3D - 344 435 - -
Lja2g2217 534 Pfam DnaJ C terminal domain 200 418 IPR002939 -
Lja2g2217 534 ProSitePatterns Nt-dnaJ domain signature. 121 140 IPR018253 -
Lja2g2217 534 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 86 440 - -
Lja2g2217 534 SMART dnaj_3 79 136 IPR001623 -
Lja2g2217 534 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 214 294 IPR036410 -
Lja2g2217 534 Hamap Chaperone protein DnaJ [dnaJ]. 77 465 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lja2g2217 534 Pfam DnaJ domain 80 141 IPR001623 -
Lja2g2217 534 SUPERFAMILY Chaperone J-domain 77 185 IPR036869 -
Lja2g2217 534 CDD DnaJ_zf 227 291 IPR001305 GO:0031072|GO:0051082
Lja2g2217 534 Gene3D - 227 291 - -
Lja2g2217 534 SUPERFAMILY HSP40/DnaJ peptide-binding domain 194 350 IPR008971 GO:0006457|GO:0051082
Lja2g2217 534 PANTHER EXPRESSED PROTEIN 86 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2217 Lja-Chr2 25402311 25409048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2217 82 141 C2H2 Transcription Factor Family AT1G74250 43.939 3.28e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2217 K03686 - gmx:100782135 731.865