Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2208 ATGGGTTCAGGAATGCAGTGGTCATTCTCAAACAAGGTCCCAGCCCTTCCTCATCAATTCCTGTCTTTCAAGACCACTCAGGAAGAAAGGTCCAGAAACAGTTCTATTAGTGATCCTTTAGCTTCATCTGGATATATGACCATCTCAACTAAAGATGCTTTTGACTCTAACCAGAAACCATTCTTACAGAAAAACTTGTCCATAGGCAAACAAGCAGGGAACAACCATGGAATGACAGTTTATCCTCTGCAATGTTCTGATGTACAATCAGCTTGCCTTCAGGAACCAAGAAAATTTCCAGTTTCCAACCAATCTAAGCAAGTGAGTCCTGTTCTTCAATCTAATCTAGCTACTACTGGATTCAACATGGTCAACTCAGTAATAAAGCCACAACCTCTTGGTTCTAAATCCTCTGCCACACCTGTATCTGTTCTTCCACCAATTGGTTCCATTGTTGGCTCTACTGACTTAAGGAATTGTTCCAAATCCTCTGGCACACCTGCTCAGCTAACCATTTTCTATGGTGGTTCAGTATGTGTGTTTGATGACATATCTCCTGAGAAGGCCAAGGCTGTCATGTTAATGGCTGGAAATGGATCTGCAGCAAATCAAACCTTGGCAGTTTCCAAAGCTAAATTGCAGACAGAAATCTCTGCTCCTTCCAAAAATGGTGGTTTCATTATAAGCCAACCCTTTCCCTCATCCTCACCACTACCAGGCCCTCTCCCAGTGACCTCTCATGCTAGTTCTCAGCCTGGGAGAGGATCTTCTGGCAACAATGAACTTCCAATGATAAGACCAGCTGGACCTTCAACTGCCCCTAATAACCATTCAAGATCTGCAGCTACAAAAATGATTCAACCAGGAGGCTTGCCTCAGGCACGTAAAGCATCATTGGCTAGGTTTTTGGAGAAGCGAAAGGAAAGGGTGATAAGCACATTGCCATACTTCAAGTGCAACAAGACATCACCTGAATGCAGCACTCCTGGATCAGACAGTGTTGGTTTCTCCATGGACTTCTCTGGATCATGTTCTCTACCTACCTCTAACTAG 1053 0.4387 MGSGMQWSFSNKVPALPHQFLSFKTTQEERSRNSSISDPLASSGYMTISTKDAFDSNQKPFLQKNLSIGKQAGNNHGMTVYPLQCSDVQSACLQEPRKFPVSNQSKQVSPVLQSNLATTGFNMVNSVIKPQPLGSKSSATPVSVLPPIGSIVGSTDLRNCSKSSGTPAQLTIFYGGSVCVFDDISPEKAKAVMLMAGNGSAANQTLAVSKAKLQTEISAPSKNGGFIISQPFPSSSPLPGPLPVTSHASSQPGRGSSGNNELPMIRPAGPSTAPNNHSRSAATKMIQPGGLPQARKASLARFLEKRKERVISTLPYFKCNKTSPECSTPGSDSVGFSMDFSGSCSLPTSN* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2208 350 Pfam tify domain 166 197 IPR010399 -
Lja2g2208 350 Pfam Jas motif 292 316 IPR018467 -
Lja2g2208 350 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 234 350 - -
Lja2g2208 350 MobiDBLite consensus disorder prediction 237 279 - -
Lja2g2208 350 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 234 350 IPR040390 -
Lja2g2208 350 MobiDBLite consensus disorder prediction 241 258 - -
Lja2g2208 350 ProSiteProfiles Tify domain profile. 163 198 IPR010399 -
Lja2g2208 350 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 5 234 IPR040390 -
Lja2g2208 350 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 5 234 - -
Lja2g2208 350 SMART tify_2 163 198 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2208 Lja-Chr2 25178855 25181962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2208 5 334 Tify Gene Family AT3G17860 38.857 3.14e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lja2g2208 tify 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2208 K13464 - gmx:100807288 419.468