LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g2194	ATGGACAGAGTTCATACTGCTAGACTAGTCATGGCTTCCTCTCTGCTTCCCTTTCTCTTCTGCTCACTGGTTCTGCTACCCATCTGTGTTTTATCACAAAACAAAAGCAGCTTAACCATTGGTGATTCTCTTAATGCTGGAACCAGCACTTCCCCTTGGTTGGTTTCACCTTCTGGTGAATTTGCCTTTGGCTTTCTCCAACTTAACGACACTGATGACCTTTTCTTACTTTCAACTTGGTATGCCAAGATTCCAGAGAAGACCATTGTCTGGTATGCTGACCAAGGCAACCCTGCTCCAAGGGGCTCAAAAGTGGTGCTCAGTGGTGAAGGATTAGTGCTCACTGGTCCCAGTAGTGAGCAGTTATGGAACGTCAGTGCTGGAGTTTCTCTTGGTTTGTTGAATGACACTGGCAACTTTGTGCTTGAGGATGATAACTCCAACACTTCCAACTCATCAAGTCCTGGAACAAAACTGATCTTTGACAGATCAGGGGATTTTTATGTTTTGAGAGAGAATAATGAAAAGTACAACGTGTTAGAGAGAGAGGGTGCAACATCTACTACTCAGTTTTATCTTCGAGCAACTCTTGATTTTGATGGGGTGCTCACACTCTATCAGTATCCGAAGAATTCAATTGGGGGTGGAGGTTGGACTCAAGTGTGGTTTGAACCAGATAATATCTGCAGTTACATTGTAAAGTCTGGTAGTGGCATTTGTGGATATAACAGCTACTGCACCTTGAGTGAATATAAGAGGCCAAAATGTCAGTGCCCAAAAAGCTACTCACTGGTTGATCCTAATGATCCTTATGGTAGCTGCAAGCCTGATTTTATCCAAGGGTGTGCAGAAGATGAACTCAGTCACCAGAAAGACCTCTATGACTATGAAGTTTTGATAGATACTGATTGGCCTCTTTCCGATTATGTGCTTCAAAAGCCTTTCACTGAAGAACAGTGCATGGAGTCTTGTATGGAAGATTGTTTGTGTTCTGTTGCCATTCACAGGGTAGGTGATAGCTGCTGGAAGAAGAAAATTCCACTTTCAAATGGGAGAGTTGATGCCACTCTAAATGGTAAGGCCTTCTTGAAAGTGAGGAAAGACAATTCCTCTCTTGCTGTTCCTCCAATTCCAGTTCCCGTCATCGTAAACAAGAACAGGAACACTTTAGTTTTGGTTGGGTCTGTGCTTTTGGGTACCTCTGCTTTTCTCAATGTTGTATTGTTTGGAGCAATATGCTTCAGCACTTTCTTTATTCTTCAGTACAAGAAGAAGCTTAGAAAAGGTACTACTGGTAGTCGTGTTGAACTTGAAACAAATTTGCGTTGCTTCACTTACGAGGAGTTGGAAGAAGCCACCAACGGGTTCAACAAAGAGCTAGGAAGGGGAGCTTTTGGTGTTGTTTATGAAGGAGTCCTGAACATGGGTTCCACAACAACTTGTGTCGCGGTGAAAAAGTTGAACAATTTCTCCTTGGAAGAGATTCACAAGGAGTTCAAGAATGAGTTGAATGCCATTGGTCTTACTCATCACAAGAACCTGGTTCGTTTAGTTGGATTCTGTGAGGCAGGATCTGAGCGTCTACTAATTTATGAGTACATGAGCAATGGCACTTTGGCAAGTTTTCTTTTCAATGGGGGAAAAAGAAAACCCAGTTGGAAACTGAGGCTACAAATCGCAATTGAGATTGCTAGAGGACTTGTGTATTTACATGAAGAATGCGGCACAAAGATCATCCACTGTGACATAAAGCCTCAGAACATACTCCTTGATGATTCCTTCAGTGCAAGAATATGCGACTTTGGATTGGCCAAGCTCTTGAAGATGAATCAGAGTAGAACCAACACTGCCATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTCAAAAACATGCCTATCACGGCTCTGGTGGATGTCTTTAGTTATGGGGTGCTGCTACTAGAGATAGTTTCCTGCAGAAGAAATGTAGAAGCGGAGTCAGAAGATGAAGCAAAAGCAATCCTAACAGATTGGGCTTATGACTGCTACTACGATGGTACTTTACTTGCCTTGGTTGAGGGTGATCAGGAGGCATTGGAGGATGAGAAGAACTTGGAGAAGTTGGTGATGATTGCTATTTGGTGTGTTCAAGAGGATCCGTGTCTTAGACCCACCATGAGAACTGTGACGCTTATGCTTGAAGGTATTGTTGAAGTGCCAGTTCCACCATGTCCTTCACCAATTAGTATTCAGTATTCTCTAGATTAA	2253	0.4283	MDRVHTARLVMASSLLPFLFCSLVLLPICVLSQNKSSLTIGDSLNAGTSTSPWLVSPSGEFAFGFLQLNDTDDLFLLSTWYAKIPEKTIVWYADQGNPAPRGSKVVLSGEGLVLTGPSSEQLWNVSAGVSLGLLNDTGNFVLEDDNSNTSNSSSPGTKLIFDRSGDFYVLRENNEKYNVLEREGATSTTQFYLRATLDFDGVLTLYQYPKNSIGGGGWTQVWFEPDNICSYIVKSGSGICGYNSYCTLSEYKRPKCQCPKSYSLVDPNDPYGSCKPDFIQGCAEDELSHQKDLYDYEVLIDTDWPLSDYVLQKPFTEEQCMESCMEDCLCSVAIHRVGDSCWKKKIPLSNGRVDATLNGKAFLKVRKDNSSLAVPPIPVPVIVNKNRNTLVLVGSVLLGTSAFLNVVLFGAICFSTFFILQYKKKLRKGTTGSRVELETNLRCFTYEELEEATNGFNKELGRGAFGVVYEGVLNMGSTTTCVAVKKLNNFSLEEIHKEFKNELNAIGLTHHKNLVRLVGFCEAGSERLLIYEYMSNGTLASFLFNGGKRKPSWKLRLQIAIEIARGLVYLHEECGTKIIHCDIKPQNILLDDSFSARICDFGLAKLLKMNQSRTNTAIRGTKGYVALEWFKNMPITALVDVFSYGVLLLEIVSCRRNVEAESEDEAKAILTDWAYDCYYDGTLLALVEGDQEALEDEKNLEKLVMIAIWCVQEDPCLRPTMRTVTLMLEGIVEVPVPPCPSPISIQYSLD*	751

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g2194	750	Gene3D	-	29	153	IPR036426	-
	Lja2g2194	750	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	30	148	-	-
	Lja2g2194	750	Gene3D	Transferase(Phosphotransferase) domain 1	534	738	-	-
	Lja2g2194	750	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	30	148	-	-
	Lja2g2194	750	SMART	blect_4	35	157	IPR001480	-
	Lja2g2194	750	ProSitePatterns	Protein kinases ATP-binding region signature.	460	486	IPR017441	GO:0005524
	Lja2g2194	750	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	578	590	IPR008271	GO:0004672\|GO:0006468
	Lja2g2194	750	CDD	STKc_IRAK	460	731	-	-
	Lja2g2194	750	ProSiteProfiles	Bulb-type lectin domain profile.	35	155	IPR001480	-
	Lja2g2194	750	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	148	745	-	-
	Lja2g2194	750	ProSiteProfiles	Protein kinase domain profile.	454	732	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja2g2194	750	SUPERFAMILY	Protein kinase-like (PK-like)	434	729	IPR011009	-
	Lja2g2194	750	SMART	serkin_6	454	728	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja2g2194	750	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	148	745	-	-
	Lja2g2194	750	SUPERFAMILY	alpha-D-mannose-specific plant lectins	75	156	IPR036426	-
	Lja2g2194	750	PIRSF	SRK	144	749	IPR024171	GO:0004674
	Lja2g2194	750	PIRSF	SRK	7	153	IPR024171	GO:0004674
	Lja2g2194	750	Gene3D	Phosphorylase Kinase; domain 1	428	533	-	-
	Lja2g2194	750	Pfam	Protein tyrosine and serine/threonine kinase	456	725	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g2194	Lja-Chr2	25023414	25025879	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g2194	440	730	Receptor kinase-like Gene Family	AT1G60800	42.373	3.30e-72	244

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Lja2g2194		PK_Tyr_Ser-Thr	1.1e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g2194	-		-	gmx:100815462	969.148