Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2184 ATGAGCCTCATCATAGCCCTCATGATCGTTACGTCCTTTTTCATTCCCCACTCCCAAACATCTCCAACTTTCTCCTCTCCTCTTCTTCCCTATCCCTACTCTTTCTTTTTAAACTCAGCAATATTGGGAGAGCAGCAGAGCAAGAGAGATGAGTGCAATGATGGTACACCAGTTGTGGTGAGCTCAAGGTGGAATCCTACCCCGGAGCAGCTAAGAGCATTGGAAGACTTGTATAGTGGAGGAACAAGGACACCTTCTGCGGAGCAAATTGAGCACATCACTGCACAGCTTAGAAGGTTTGGTAAAATTGAAGGGAAGAATGTTTTCTATTGGTTTCAAAATCACAAAGCCAGAGAAAGGCAAAAGCGCCGCCGTCAAATGGAATCATCATCATCTGCTGCTGGTGATCATGGTCACCAACAACACCGCGATTGTGAGGCTCCGGAGAAGAAAAATCCAGGTGCAACTAGGACAATGTCTGAAGTGGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACTCATGCAGAGGAATCTGTTCCAACACAAAGAGCAGCAAAAGCAGTGGTTGCTGCAGAGTGCAGACTTGGTGGATGGCTCCAATTTGATGAAGAAGAATCACAACAAAGAAGAAACTTTCTGGAAAGGAATGACACATGGCACATGATGCATCAGTTAACTTGTCCTCCTCCACCTGCACCTGTCACACCCCTCATAAAAACCTCTCCTAATGCCTCTGCATCCACTTCTAGTAGTATCATGGCAACTACTACAACTACCACAGTAAGAAATTACCTCATTAAAACCCATGATCTCACCTTTTTCATTTCACCTCAGAGTGAAGAACATGATAACTGCGTTGTGGAGTCTCAAACCCTTCAACTTTTCCCCTTGAGGAGTACTAGTGATGGTGATGGCAGCAGCAGTGGAGACATTAACGATAAAGAGACAGAGATATCAGCTTCAGCATTGAATTCCAACCTGACCCCAAGTCAATATTTTGAGTTCCTTCCATTGAAGAATTGA 1032 0.4486 MSLIIALMIVTSFFIPHSQTSPTFSSPLLPYPYSFFLNSAILGEQQSKRDECNDGTPVVVSSRWNPTPEQLRALEDLYSGGTRTPSAEQIEHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESSSSAAGDHGHQQHRDCEAPEKKNPGATRTMSEVEQTKNWAPSTNCSTHAEESVPTQRAAKAVVAAECRLGGWLQFDEEESQQRRNFLERNDTWHMMHQLTCPPPPAPVTPLIKTSPNASASTSSSIMATTTTTTVRNYLIKTHDLTFFISPQSEEHDNCVVESQTLQLFPLRSTSDGDGSSSGDINDKETEISASALNSNLTPSQYFEFLPLKN* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2184 343 MobiDBLite consensus disorder prediction 157 182 - -
Lja2g2184 343 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 45 343 - -
Lja2g2184 343 SMART HOX_1 59 126 IPR001356 GO:0003677
Lja2g2184 343 MobiDBLite consensus disorder prediction 137 151 - -
Lja2g2184 343 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 45 343 IPR044555 GO:0003700|GO:0099402
Lja2g2184 343 MobiDBLite consensus disorder prediction 120 183 - -
Lja2g2184 343 CDD homeodomain 63 123 IPR001356 GO:0003677
Lja2g2184 343 Pfam Homeodomain 62 121 IPR001356 GO:0003677
Lja2g2184 343 Gene3D - 63 130 - -
Lja2g2184 343 ProSiteProfiles 'Homeobox' domain profile. 67 122 IPR001356 GO:0003677
Lja2g2184 343 SUPERFAMILY Homeodomain-like 62 127 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2184 Lja-Chr2 24836338 24840596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2184 57 343 Wox Gene Family AT3G18010 39.752 5.47e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lja2g2184 Homeodomain 3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2184 - - gmx:100812656 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2184 2 24836338 24840596 Lja4g0021 4 173863 176048 ECH
Lja2g2184 2 24836338 24840596 Lja2g2184 2 24836338 24840596 ECH