Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2170 ATGGGCATCAAGGATCTTCTCAGATTCATGAAGCCTTACATTCAACCCATCCACATCGAGAAGTACGCTGGCAAACGCGTGGGTATTGATGCGTATTCATGGCTTCACAAAGGGGCTTATTCATGTAGTATGGAGCTTTGTTTAGATTCTGATGGTGACAGGAAATTTCGGTACATTGAGTATTTTATGCATCGAGTCAACTTGCTTCGCCACTATAAAATAACCCCGGTTGTTGTTTTTGATGGTGGCAATGTTTCTTGTAAGGCAGGAACAGAACAAGAGAGACACAGGAAAAGAAAAGCTAATCGCGAGTTGGCAATGGCGAAGCTTAAAGAGGGAAATGTTAGTGCAGCTTCAGAGCTCTTTCAGAGAGCAGTGAATATTACTCCACTCATGGCACACAAACTCATTCAGACTCTTAAATCAGAGAATATTGAGTTTGTTGTAGCTCCATATGAAGCGGATGCTCAGTTAGCATATATGTCCAATCTTGAACCAGAAAAGGGTGGAGTTGCAGCAGTTATTACAGAAGATAGTGATTTGATAGCATATGGCTGTCCAGCTATTATTTTTAAGATGGATCGCCAAGGGAATGGTGAAAGAATAGAGTTAGAGAAGGTTTTTTCTGCTGAATCTGGTAGACCTTCATTTCGGGGTTTTGATTTGAAACTCTTCACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTGTTGCTCGAGCTCATGGCTTAGTTTCCAAGTATCGGAACCTAGATCGTATCTTGTCTGTTCTCAAGTTTGAGAAAGGCGACCAAATGCCTGAAGATTACGCCAAATCCTTCCAAGCGGCAATTGCAGTCTTTCAGCATGCCCGAATATATGATACCAATACTAAAGAGCTTAAGCACATGAATCCTCTTCCACAAGATATTCTTGAGTCACTTGATGGAAAACTTGATTTTTTGGGACCAGAAATTCCCCCAACTATAGTGACAGCAATAGCTGAAGGAAACTTGAACCCATCAACTAAGGAAGCCTTTGAAAAGTCTGAAAGTCCTAGATTTCCTCTGCACCCCATTGATCCCCAAAGCATTGGTCAAATCTACAAGAGTGAAGTTCCTGCATCAGTTACACAGGAGAACTGTTTTTCAGTCTTTGGCTCTCATAATACCAGCCAGAAGAGCACAGTGACAAGACTCCAAGACGAAAATAAGTATTCTGATGAAGCATTGGCACTTCAGAAACTAATCATCCCACTGGGTACAAAGAAGACAGTAAAAAACACCATTCTATCAGATGACACTCCTTTGAAGGTTCCTGACAACAACCCATTCAGGATAAGAAAACCTGAGGAAGTGTATTTGGTACAAAAAGAGGACACGGTTGAAAATGTTTCTAGTGTCAACAGTGTGCAATATATCGACCTGTGCTTGTCTCCAAATAACTCTGAAGAAGAGGGGCCTAAAAATCTCTCAAGGAAAAGGACATTTCATAACATTTGCTCAGATAAACTGGAAGGCACTGATGAAGAGGTTTCAGGAGTAACTGAAGTAGTAGATTGTGAGGTTTTATGCTTGACTGTGGAAACCCAAGAGAGTGTTAATTCTGAGACCAGGAAAGGTGCTGATTTGAAGGCAAAAGGTGGAAGTGAAAAGAAATCAAAGAGAAGTAACTCTAAGAAAGCAGGGAGTAACAGCAGAACTATTTTGAATTTCTTTTCTCGAGTGTAA 1731 0.4102 MGIKDLLRFMKPYIQPIHIEKYAGKRVGIDAYSWLHKGAYSCSMELCLDSDGDRKFRYIEYFMHRVNLLRHYKITPVVVFDGGNVSCKAGTEQERHRKRKANRELAMAKLKEGNVSAASELFQRAVNITPLMAHKLIQTLKSENIEFVVAPYEADAQLAYMSNLEPEKGGVAAVITEDSDLIAYGCPAIIFKMDRQGNGERIELEKVFSAESGRPSFRGFDLKLFTGMCVLAGCDFLPSVPGIGVARAHGLVSKYRNLDRILSVLKFEKGDQMPEDYAKSFQAAIAVFQHARIYDTNTKELKHMNPLPQDILESLDGKLDFLGPEIPPTIVTAIAEGNLNPSTKEAFEKSESPRFPLHPIDPQSIGQIYKSEVPASVTQENCFSVFGSHNTSQKSTVTRLQDENKYSDEALALQKLIIPLGTKKTVKNTILSDDTPLKVPDNNPFRIRKPEEVYLVQKEDTVENVSSVNSVQYIDLCLSPNNSEEEGPKNLSRKRTFHNICSDKLEGTDEEVSGVTEVVDCEVLCLTVETQESVNSETRKGADLKAKGGSEKKSKRSNSKKAGSNSRTILNFFSRV* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2170 576 MobiDBLite consensus disorder prediction 561 576 - -
Lja2g2170 576 MobiDBLite consensus disorder prediction 536 558 - -
Lja2g2170 576 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Lja2g2170 576 SMART xpgineu 141 213 IPR006086 GO:0004518
Lja2g2170 576 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Lja2g2170 576 SMART xpgn3 1 102 IPR006085 GO:0004518
Lja2g2170 576 MobiDBLite consensus disorder prediction 536 576 - -
Lja2g2170 576 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Lja2g2170 576 Gene3D - 219 291 - -
Lja2g2170 576 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 221 349 IPR036279 -
Lja2g2170 576 CDD H3TH_FEN1-like 225 295 - -
Lja2g2170 576 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 571 - -
Lja2g2170 576 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Lja2g2170 576 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Lja2g2170 576 Pfam XPG N-terminal domain 1 101 IPR006085 GO:0004518
Lja2g2170 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Lja2g2170 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Lja2g2170 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lja2g2170 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Lja2g2170 576 Gene3D - 1 212 - -
Lja2g2170 576 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 571 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2170 Lja-Chr2 24605345 24611013 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2170 1 315 Core DNA Replication Machinery Family AT5G26680 23.404 3.03e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2170 K10746 - gmx:100817932 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2170 2 24605345 24611013 Lja2g2170 2 24605345 24611013 ECH