Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2169 ATGTCTCACAGCACCGCCAACCACGACGGAGAATCCCTCTCCGCCACCTCCTCCGACGACGATGAAGGCCTCCAAGAAGACATGGCCGCCATCGCTCGGGCATGCATGATCACCGGCCACGACACCGCGGCCGCTGATGAAACTCCGCCGGAATACGACGACGACCCTCTCCTTGCTCCCGGCGACGCCTTGGTCCCTTTGGCGTCTGACTCTGATGATGAGCGGCGGAATGACATTGAGTGTCTCAAGAGAGTTCAGAGCCTCTACAATCCTCTCCCTGATCATCCTCTTAGCCCTCTTCCCACCGTGTCGGACGACGACGAAGAGGAGAATGATGCTGAAACCCTTCGCGCCATTTACAAAAGGTTTTCCAATTTTGAGAGAAGTGACCATGAAGGTGGAAAGGAAAATTTGGCTGAGGGGAATCAGGTCTTGAGCCGAGGCAGTGAGGGGGACATTGCTGGTGGCTCCTGCTACAAATCAGATGCTGCTGAATTATATCCTGATAATGCTGCTCATTTGTTGACGGGTCACTTTGGAAATGACTTTCTTGATTGTTTGGAACCTGATGATGCGGGCAACTCATCCCAATTGCCACAGAAAATAGCAAACTTTCCCCCGGCGGCTCTGGCTTTGATTGATGCCATCAAGAAGAATAGGGCTTATCAGAGGTTTCTTAGAAGTAAAATAATTGAGATGGAATCGAAAATTGAGGAAAACGAAAAAATAAAGAACAACATCAAACTCGTTAAGGACTTTCAGATTTCATGCAATAGAAGAACAGGGAGTGCTTTAGCACTGAAAAAGGACCCTCGAGTTCAGTTAATATCAACAAAAAAGAGTCCTGCCCCAAATAAATCGAAGCAGAACAAAAAAGCATCTCCAATGTGTTATGGCCCAGAGGAGAATCCTCGAGTTGCTAATTATAGGATGGTATTGGAAAGATTTCCGCTTTCAATTGATAGAAAAAGATGGTCTAATGTGGAAAGGGAAAACCTTTCAAAGGGAATTAAGCAACAATTCCAAGAAATGGTTCTTCAAACCTCATTAGATAGAACAAGTTCTGACTGCTCAAATGACATGGATAGTATGATGGCATCTGTTAAAGATCTTGAAATTACACCAGCTAGGATGAGAGAGTTTTTACCTAAAGTTAATTGGGATCAGTTAGCTTCCATGTATGTTGCTGGCCGTTCTGGCGCTGAATGTGTATCCAGGTGGTTAAATTGTGAAGATCCTTTGATCAACCATGCCCCATGGACTGGTGAAGAGGACAGGTCTCTTTTGAGTATTGTCCAAAGTAGGGGCATTAGGAACTGGGTTGATATTTCTGTATCACTGGCCACAAAAAGGACTCCGTTTCAATGCTTGGCCCGATATCAAAGGAGCTTGAATCCTTCGATGTTAAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTTACTTCCGCTGTTGCATTTTTTGGTGAAAGTGATTGGCAGTCTGTGGCTTCTGTTTTAGAACGGCGGACTGGCACACAGTGCTCAAATAGGTGGAAAAAATCCCTTTGTCCTGTGAGGAGAGGGAGCTTTTCATTAGAGGAGGATAAGCGCTTAACGGTAGCTGTCATGCTTTTTGGCCGGAAGTGGAATTTGATAGCGAAATACATTCCTGGACGGATCCAATCTCAGTGTAGGGACAGATACCTCAATAGTTTGGATCCTTCTTTGAAATGGGGCGGATGGACTGAGGAAGAGGATGCAAAACTAGAAGCTGCAATTGCCAAGCATGGATATTGCTGGTCTAAGATTGCTGAAGAAGTGCCTCCCCGTACGGACTCTCAATGCAGGAAGAGATGGAAGGTATTATACCCGGAGCAAGTTCCTCTGCTTCAAGAAGCAAGAAAGAGACAAAAGACTCTTATCAGCAATAATTTCGTTGATCGGGAATCTGAACGCCCAGCCTACCTTACTCTCAATGACTTCATTCCTATACAGATGTTAGCTGGACCGTCTGAAGGTGGTCCTTCGAGTCAAAGGAAGCGGAACACGAAATCAAGCGATGTTCCTAAAAAAAGAAGGTATAGGAAAAGTGTGAAAAAGGCTGAGGAAGGACAAGATAGATTCATCACGTTCATCAATTTTCCAAAGAAATTTAGATCTACAACTCATGCTAGAATGCCTCGACTTTGTCTCAAGGAAGTTGATGATATGATGGCATATAACAAGGGCAAGATTTGTATTGAGAGTTCGGAAAGTGAAGATGGAGACTTGAGTCTTGCATCTCTTTTGCAAAAGTCAAAGAATAGACGTGTTAAATGTACAAAAAATGTGATTCAGGCTTCCACTGCTGAGCAAGATGGTACAGAGGAAACTCATGATTTGTCCCTGCAGCACGATGTTGCTTTTGATGGATACGTGAGCAAACCAGAAGATGCTAATGGTGACAATGATGATATGCCTCTTGCTTGTCTTTTGGGAGACAAATCAAAGAAACGTCGTCAAGCTGCTAAAGGAGGTCGTGCAGGCTGTTCCAAGGTGAAAAAGGGAGTGAAGGGTAGAAGAAACAAGCCAACCATCATAGCTTATGGAAGTGGATCTTCAGTGGCAAAGCTTGTTGAAGAGGACACTGTTTTGCCTGGTGGTGTGAGTGTGATTGAACCCCCAAACGCCGATGTGGAAGAACATGATGACGAACCGCTTGCTTCCTTCCTAAAAGATAGGAAGGTAAAGACGGGGCGGCGTCCGCGTCTAACGTGA 2739 0.4505 MSHSTANHDGESLSATSSDDDEGLQEDMAAIARACMITGHDTAAADETPPEYDDDPLLAPGDALVPLASDSDDERRNDIECLKRVQSLYNPLPDHPLSPLPTVSDDDEEENDAETLRAIYKRFSNFERSDHEGGKENLAEGNQVLSRGSEGDIAGGSCYKSDAAELYPDNAAHLLTGHFGNDFLDCLEPDDAGNSSQLPQKIANFPPAALALIDAIKKNRAYQRFLRSKIIEMESKIEENEKIKNNIKLVKDFQISCNRRTGSALALKKDPRVQLISTKKSPAPNKSKQNKKASPMCYGPEENPRVANYRMVLERFPLSIDRKRWSNVERENLSKGIKQQFQEMVLQTSLDRTSSDCSNDMDSMMASVKDLEITPARMREFLPKVNWDQLASMYVAGRSGAECVSRWLNCEDPLINHAPWTGEEDRSLLSIVQSRGIRNWVDISVSLATKRTPFQCLARYQRSLNPSMLNSEWTEEEDAQLTSAVAFFGESDWQSVASVLERRTGTQCSNRWKKSLCPVRRGSFSLEEDKRLTVAVMLFGRKWNLIAKYIPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDAKLEAAIAKHGYCWSKIAEEVPPRTDSQCRKRWKVLYPEQVPLLQEARKRQKTLISNNFVDRESERPAYLTLNDFIPIQMLAGPSEGGPSSQRKRNTKSSDVPKKRRYRKSVKKAEEGQDRFITFINFPKKFRSTTHARMPRLCLKEVDDMMAYNKGKICIESSESEDGDLSLASLLQKSKNRRVKCTKNVIQASTAEQDGTEETHDLSLQHDVAFDGYVSKPEDANGDNDDMPLACLLGDKSKKRRQAAKGGRAGCSKVKKGVKGRRNKPTIIAYGSGSSVAKLVEEDTVLPGGVSVIEPPNADVEEHDDEPLASFLKDRKVKTGRRPRLT* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2169 912 ProSiteProfiles Myb-like domain profile. 465 516 IPR001005 -
Lja2g2169 912 CDD SANT 472 516 IPR001005 -
Lja2g2169 912 Pfam Myb-like DNA-binding domain 420 481 - -
Lja2g2169 912 Pfam Myb-like DNA-binding domain 521 564 IPR001005 -
Lja2g2169 912 Pfam Myb-like DNA-binding domain 574 615 IPR001005 -
Lja2g2169 912 ProSiteProfiles Myb-like domain profile. 412 464 IPR001005 -
Lja2g2169 912 MobiDBLite consensus disorder prediction 879 912 - -
Lja2g2169 912 Gene3D - 574 620 - -
Lja2g2169 912 Gene3D - 471 518 - -
Lja2g2169 912 Gene3D - 418 468 - -
Lja2g2169 912 SUPERFAMILY Homeodomain-like 393 447 IPR009057 -
Lja2g2169 912 SMART sant 520 568 IPR001005 -
Lja2g2169 912 SMART sant 571 619 IPR001005 -
Lja2g2169 912 SMART sant 416 466 IPR001005 -
Lja2g2169 912 SMART sant 469 518 IPR001005 -
Lja2g2169 912 SMART sant 321 413 IPR001005 -
Lja2g2169 912 MobiDBLite consensus disorder prediction 1 27 - -
Lja2g2169 912 CDD SANT 575 616 IPR001005 -
Lja2g2169 912 MobiDBLite consensus disorder prediction 279 299 - -
Lja2g2169 912 CDD SANT 523 566 IPR001005 -
Lja2g2169 912 MobiDBLite consensus disorder prediction 90 112 - -
Lja2g2169 912 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 567 621 IPR017930 -
Lja2g2169 912 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 465 520 IPR017930 -
Lja2g2169 912 MobiDBLite consensus disorder prediction 888 902 - -
Lja2g2169 912 Gene3D - 519 572 - -
Lja2g2169 912 ProSiteProfiles Myb-like domain profile. 567 617 IPR001005 -
Lja2g2169 912 SUPERFAMILY Homeodomain-like 468 562 IPR009057 -
Lja2g2169 912 SUPERFAMILY Homeodomain-like 545 618 IPR009057 -
Lja2g2169 912 MobiDBLite consensus disorder prediction 1 19 - -
Lja2g2169 912 MobiDBLite consensus disorder prediction 661 694 - -
Lja2g2169 912 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 16 697 - -
Lja2g2169 912 CDD SANT 419 464 IPR001005 -
Lja2g2169 912 ProSiteProfiles Myb-like domain profile. 520 566 IPR001005 -
Lja2g2169 912 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 521 566 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2169 Lja-Chr2 24510788 24518385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2169 160 651 MYB-Related Transcription Factor Family AT3G18100 53.663 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g2169 Myb_DNA-bind_6 7.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2169 K09422 - gmx:100818474 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2169 2 24510788 24518385 Lja2g2169 2 24510788 24518385 ECH