Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2165 ATGGCAGAAAACGATCCTTCCAAGAAAGTAGCTGATAGGTATCTCAGGCGTGAAGTCCTTGGTGAAGGTACCTATGGTGTTGTGTACAAAGCCATTGATACCCAGACAGGACAAACGGTTGCCATTAAAAAGATTCGGCTTGGCAAGCAGAAAGAAGGGGTGAATTTTACAGCTCTTAGGGAAATTAAACTGCTTAAAGAGCTTAAAGATCCAAACATTATTGAGTTGATTGATGCGTTCCCACATAAAGGGAATTTACATCTTGTGTTTGAATTCATGGAGACAGACCTCGAAGCTGTCATAAGAGACCGGAACATTTTCCTTTCTCCAGGAGATATTAAATCTTACCTTCAAATGACGCTGAAAGGTCTTGCTTTTTGCCACAAGAAATGGGTTTTGCATAGAGATATGAAACCAAATAATTTGTTGATAGGACCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATATTTGGAAGCCCAGATCGCCGGTTCACTCATCAGGTGTTTGCTCGGTGGTATAGAGCACCTGAGCTATTATTTGGTACAAAGCAATATGGTTCAGGGGTAGATGTCTGGGCTGCAGCTTGCATATTTGCTGAACTCCTCCTTCGTCGGCCCTTTCTTCAGGGTTCAAGTGATATTGATCAATTAGGAAAGGTTTTTGCAGCGTTTGGAACTCCATCACCCTCTCAGTGGCCTGATATGGTATACCTTCCAGATTATGTTGAATACCAATATGTTCCTGCTCCCCCTTTGCGTTCTTTATTTCCGATGGCAAGTGAAGATGCTTTAGATTTGTTGTCAAAGATGTTCACATATGATCCGAAGGTTAGAATTTCCGTGCAGCAGGCATTAGAACATAGGTACTTTTCTTCTGCGCCTCTGCCTACAGTTCCCGACAAGCTTCCTAGACCTGCCCCTAAGAAGGAGTCTAGGGCTCAAGATTTCAATCCTCATGAGGGTCCCACTGTCTTATCACCTCCAAGGAAGTCTAGAAGAGTGATGCCAGGCCGTGATGGGTTTGAAGGAAATTCTTTGCAAGGGGAGGACAAGATTGATGACGATGTTGGTAATTTCAAGCAAACAGCTGGTGATAATACAGGCAAGAATGAGCCGGCACCAATGTCTCTAGATATTTCTCTCTTCGGATTAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACAGATCACATTTAAAAAGAAAATTAGATCTAGAATTCCAGCATGACTAG 1248 0.4263 MAENDPSKKVADRYLRREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKVFAAFGTPSPSQWPDMVYLPDYVEYQYVPAPPLRSLFPMASEDALDLLSKMFTYDPKVRISVQQALEHRYFSSAPLPTVPDKLPRPAPKKESRAQDFNPHEGPTVLSPPRKSRRVMPGRDGFEGNSLQGEDKIDDDVGNFKQTAGDNTGKNEPAPMSLDISLFGLKPPNRPTINSADRSHLKRKLDLEFQHD* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2165 415 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Lja2g2165 415 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2165 415 MobiDBLite consensus disorder prediction 300 381 - -
Lja2g2165 415 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Lja2g2165 415 PANTHER CELL DIVISION PROTEIN KINASE 9 356 - -
Lja2g2165 415 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Lja2g2165 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lja2g2165 415 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Lja2g2165 415 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Lja2g2165 415 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2165 415 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 356 - -
Lja2g2165 415 MobiDBLite consensus disorder prediction 348 362 - -
Lja2g2165 415 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2165 Lja-Chr2 24453558 24459358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2165 8 412 Core Cell Cycle Gene Families AT1G73690 75.062 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Lja2g2165 Pkinase 1.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2165 K02202 - mnt:21388634 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2165 2 24453558 24459358 Lja2g2165 2 24453558 24459358 ECH