Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2147 ATGAACGAAAACGCAGAGACCCTTAAGCGCGAAGCTGATTCGGAACCTGTAGTTGCATTGAAGAAGTCGAGGATCGAATCTTCAGAAGAGAATGCTGCTGCAAAGGAAGTCACTTTCCACATTGAAGCTGATGCCGCTGAGGATAAAGGGTCAAGGCATACCATGGAAGATGCATGGGTCGTGCTTCACGACGCAGCCCTAGATTCCCCTGGAACTTTGAGATGTGCACACTATGCAATTTATGATGGACATGGAGGCCGCTTAGCTGCGGAGTATGCGCAGAAGCATTTGCATGGGAATGTTCTTTCAGCTGGATTACCACGTGAGTTGTTGGATGTAAAGACAGCTAAAAGATCAATACTTGATGGTTTTCGTAAAACTGATGAGTCTCTTCTTCAAGAAAGTGCTGAAGGGGGATGGCAGGATGGTGCCACAGCTGTATGTCTTTGGGTACTGGGACAAAAAGTTTTTGTGGCAAATGTTGGAGATGCCAAAGCAGTTTTAGCTCGATCGACTATACCTGATGGATCTCAAGGTCACTCAGATGGAGTCCATGCCCTGAAAGCAATTGTTTTAACAAGAGAACACAAACCTATCTTCCCACAGGAGCGTGCACGAATTCAGAAGGCCGGTGGTTTTGTGAGCTCAAATGGAAGATTACAAGGGCGTCTAGAAGTTTCTAGGGCTCTGGGAGATCGTCAGTTTAAAAAGGTGGGTGTTATTGCAACCCCAGATATCCAGTCCTTTGACCTTACTGATAGAGAGCATTTCATCATTCTTGGCTGTGATGGCTTATGGGGGGTATTTGGTCCCAGTGATGCTGTTGACTTTGTCCAGAAGTTATTGAATGAGGGACTACCTGTTACAACTGTGAGCCGGCGTCTTGTAAGGGAAGCTATTCGCGAGCGCCAGTGCAAAGACAACTGCACTGCAATTGTCATTGAAATGAAGAGAGAGATAGAAGAAATAATATGTGGAAATAAGATGGAAGAGAAAATGAGACCACCCCTTACCTTATCTTTACTGTTTCAGTTCTTCCTATTAGCACTACTGGGGATCACTGCAACACAAGGATTTTACTTGTTGGGACTGTATTATGCTTCTCCAACTTTTGCTTCTGCAATGCAAAACTCAGTTCCTGCAATTACTTTTGTCTTGGCCTCAGCTTTAAGGCTTGAGGAAGCCAACATTGCAAGGAGAGATGGATTGGCAAAGGTTCTAGGAACCATTGCTAGTGTGGGGGGTGCCACTGTAATCACTCTTTACAAAGGTCCTCCTCTTCTTCACATGCAAACACAAGGAGTCACCTTAGAAGTAGATCAGTCTTCTACAAAAAATGTGCAAAATTGGACATGGGGTTGCATATACTTGCTTGGACATTGTTTATCATGGGCTGGCTGGATGGTTTTTCAGGCTCCTGTGGTGAAGAAGTATCCAGCAAAACTAACCCTCACTTCCTTTACATGCTTCTTTGGATTGATCCAATTCTTGGTCATAGCCGCCTTCACAGAAACTGATCTTGAGAAGTGGAAGATAAAATCATCAGAGGAGCTTTTCACCATACTATATGCTGGAATTGTAGCTTCCGGCTTTGTCATAGCTCTCCAAACATGGTGTATTCAAAAGGGTGGCCCTGTGTTTGTTGCTGTCTTCCAGCCAATACAAACTGTTCTAGTTGCTGTCATGGCAGCCCTTATTCTTGGTGATCAATTATATTTTGGAGGGGTTATTGGTGCAATTCTGATTGTGTTTGGTCTATACTTAGTCCTATGGGGCAAAACAAATGAAAAGAAAGTGAGTGAGACATCATTAACAAAGCCATTGCTAAATGCAGAGGAGGAAAATAAAGCTACTGATTTAGCTCCCAAGGACATACCTTGA 1881 0.4391 MNENAETLKREADSEPVVALKKSRIESSEENAAAKEVTFHIEADAAEDKGSRHTMEDAWVVLHDAALDSPGTLRCAHYAIYDGHGGRLAAEYAQKHLHGNVLSAGLPRELLDVKTAKRSILDGFRKTDESLLQESAEGGWQDGATAVCLWVLGQKVFVANVGDAKAVLARSTIPDGSQGHSDGVHALKAIVLTREHKPIFPQERARIQKAGGFVSSNGRLQGRLEVSRALGDRQFKKVGVIATPDIQSFDLTDREHFIILGCDGLWGVFGPSDAVDFVQKLLNEGLPVTTVSRRLVREAIRERQCKDNCTAIVIEMKREIEEIICGNKMEEKMRPPLTLSLLFQFFLLALLGITATQGFYLLGLYYASPTFASAMQNSVPAITFVLASALRLEEANIARRDGLAKVLGTIASVGGATVITLYKGPPLLHMQTQGVTLEVDQSSTKNVQNWTWGCIYLLGHCLSWAGWMVFQAPVVKKYPAKLTLTSFTCFFGLIQFLVIAAFTETDLEKWKIKSSEELFTILYAGIVASGFVIALQTWCIQKGGPVFVAVFQPIQTVLVAVMAALILGDQLYFGGVIGAILIVFGLYLVLWGKTNEKKVSETSLTKPLLNAEEENKATDLAPKDIP* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2147 626 Pfam EamA-like transporter family 337 420 IPR000620 GO:0016020|GO:0016021
Lja2g2147 626 Pfam EamA-like transporter family 452 590 IPR000620 GO:0016020|GO:0016021
Lja2g2147 626 SUPERFAMILY PP2C-like 39 316 IPR036457 -
Lja2g2147 626 Pfam Protein phosphatase 2C 46 304 IPR001932 -
Lja2g2147 626 SUPERFAMILY Multidrug resistance efflux transporter EmrE 337 421 - -
Lja2g2147 626 SMART PP2C_4 38 314 IPR001932 -
Lja2g2147 626 PANTHER WAT1-RELATED PROTEIN 329 604 - -
Lja2g2147 626 SUPERFAMILY Multidrug resistance efflux transporter EmrE 510 594 - -
Lja2g2147 626 CDD PP2Cc 46 315 IPR001932 -
Lja2g2147 626 PANTHER WAT1-RELATED PROTEIN 329 604 IPR030184 GO:0016021|GO:0022857
Lja2g2147 626 Gene3D - 20 322 IPR036457 -
Lja2g2147 626 ProSiteProfiles PPM-type phosphatase domain profile. 42 316 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2147 Lja-Chr2 24235271 24246277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2147 329 619 Nodulin-like Gene Family AT3G18200 65.886 1.74e-134 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2147 K17500 - lja:Lj2g3v0692470.1 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2147 2 24235271 24246277 Lja2g2147 2 24235271 24246277 ECH