Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2134 ATGCCTGTTGTTACTCAACACATCAAATGGAGAAGACCCAGAAGCCATTTCAGGCAAAGAATTTCAGAAACTGATCCAAGTCCACAGCTCTCTCCAATAACCCAATCCACTCGCTGCAAATCCACCATTTCCTCTCTCCTCTCAACTTTCTCCACCATCTCCAATGAAACCACTCATGACAGTGGCCAGAACAGGAAGCAGAGGAAGAACACCACCAACAGCAACAGCAATGGCAATTCCTCTGCAGGAACCTTCAGAGGGCTCGGTTGCACCGCCGGTGCGTCCCAGCAGGTGTCGGTGCCGGCGGTGATTCGATCCTCCGCAGACTGGCAAGCAAAGAAGACCAGGAAAAAGAAGCTCAGGAAGAATAGTGACAGAAACAACAGAACAGAGTGTCCATGTCATGGCTCTGCCACCTGTGTGGATTTTCAGGATGTTTGGTGTAGCCCCGGAATTGGGTCTGTGGATTGTGTTGTGGCCAGGAAGAATGTGTCTTCAAGACTAAAACTTGATGCAGAGAGAATCACACACAGGGAGCGTCCATCCTATTTGGCAAGGCGCATGGTAAACCCAGAAAGTATCTCATTTTTGGATGATGATTCTGACGTTTTCCCAATACGCCCTGCTAGATTCTATCGCCACAACATTCCACATCCTTCTGCTGATCATCTTGCTGAGATAGTGAAAATTCAAGGAAGACTGATGGGGGGAAGATTGAATTCACATGATCAATTTAGAGACTGGAGACTTGATATTGATAACATGTCCTATGAGCAATTGCTTGAGCTGGGTGAGAAAATTGGGTATGTGAACACGGGAGTTAAAGAAGATGAGATGGAACTCAATATAAGGAAACTTAAGCTTTTCATTTCAAATGATACATCAAAACATCAACTAGACAGAAAGTGCACCATTTGTCAGGAGGAGTATGAGTCAGATGATGAGCTGGGGAAGTTGAAATGTGAACACTGCTTTCACTTTCAGTGCATAAAACAATGGCTAGTGCTTAAAAACTTCTGCCCTGTATGCAAGCAAGAAGTTGTGGTTCGACACTGA 1056 0.4536 MPVVTQHIKWRRPRSHFRQRISETDPSPQLSPITQSTRCKSTISSLLSTFSTISNETTHDSGQNRKQRKNTTNSNSNGNSSAGTFRGLGCTAGASQQVSVPAVIRSSADWQAKKTRKKKLRKNSDRNNRTECPCHGSATCVDFQDVWCSPGIGSVDCVVARKNVSSRLKLDAERITHRERPSYLARRMVNPESISFLDDDSDVFPIRPARFYRHNIPHPSADHLAEIVKIQGRLMGGRLNSHDQFRDWRLDIDNMSYEQLLELGEKIGYVNTGVKEDEMELNIRKLKLFISNDTSKHQLDRKCTICQEEYESDDELGKLKCEHCFHFQCIKQWLVLKNFCPVCKQEVVVRH* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2134 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 350 IPR013083 -
Lja2g2134 351 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 3 351 - -
Lja2g2134 351 Pfam Ring finger domain 302 344 IPR001841 -
Lja2g2134 351 SUPERFAMILY RING/U-box 302 349 - -
Lja2g2134 351 MobiDBLite consensus disorder prediction 67 88 - -
Lja2g2134 351 MobiDBLite consensus disorder prediction 54 88 - -
Lja2g2134 351 MobiDBLite consensus disorder prediction 108 128 - -
Lja2g2134 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 351 IPR045191 GO:0061630
Lja2g2134 351 SMART ring_2 303 343 IPR001841 -
Lja2g2134 351 ProSiteProfiles Zinc finger RING-type profile. 303 344 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2134 Lja-Chr2 23970835 23975187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2134 4 258 C3H Transcription Factor Family AT1G73760 38.621 1.82e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2134 - - lja:Lj2g3v0694690.1 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2134 2 23970835 23975187 Lja4g0061 4 491592 496447 ECH
Lja2g2134 2 23970835 23975187 Lja2g2134 2 23970835 23975187 ECH