Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2126 ATGCGTCTACCAAATGCTTTTGCGAAGATGGCACGCCAACAAGGATGGGAACCCAGGGATGTCATTCTTAAGAACAGTAGTGGGAAAGTTTGGGAAGTCAAAACACTTGCAGTTTGTAGTCAACTGTATTTTGATGATGGTTGGAAGCAGTTCAGGGAAGACAACTGTTTAGGGGCTATGGACTTTGTCTTTTTTACACATGTTGAAGACAATGTGTTCAACTTTAAGATCTGTGAGCTATCAACAAGGTGTGAAAAGATGAAGGTAGAGGATAGTGAAGAACAAGAAAAAGAAAAGGGCGATGTTGATGATGTGATGGAGTTGGATAAGGAGGAGGAAGGAAAACAACAAGATGGGGATGGTGATGAACATGATCCTGGTCAAGATGATTATGGTGATGAGGTGGAGGAGAAAGAAGAAGATCAGCAACAAGAAGATGAGGATGGTGATGAACATGATCCTAGTGAAGATGATGATTCTGAGGAGGAGGAGGAAGAAGAAGAGCAACAAGATGAGGATGGTGATGATTATGATCCTGGTGAGAAACATGGAAAAGAAAAGTATGATGTGATAGAGTTGGATGATGAGGAAGAAGAAGAAGAACAAGATGAGGATGGTGATGAATATCATTCTGATTATTTTATTTTTTTGAAAAGCCAAAATGATGAATATGATTCTGATGATGATGAGGAGGTTGAGGAGGAGGAGAATACAGAGTTGGAAGAGAGGGATGAAGAAGAATCCAAGTTAACCAAAAAGAGAAAATCTCATCCCAAAGTCTGCAAAGTTAGCTCCAAAAGGGAGATTGGAAGTAGTTCAGCCACCAAGGCTGAAGATGCAGGACATGAAAACATTGATGCAGCAATGTATATTCGATGTGACCATCCCTACTTCATTGTCAAACCACTGAATGGCAGTCGCGGTGGATTGCTTATTCCACACTTAATCATCAAAGACTTTTCCCTTCGTTTTAATAAGAAGATCACTCTTGTATGCTGCCAGTGCCAGAATATTCCAAGAAATCAACTGCGATACTACCATCGCAGCTTGCCTCAACTGACACCCGTCAACAAAAAACATACAAAAGAGGCAGACGTAAGCGTGTGGACAGATGGGCGAGTGTGTGCCAATGGGTGGTTAGGTTTTTGCAGAAAGAACAAGTTCACAGAAAATGATACATGCATCTGTGAAATTGTGTTGCGGGAAGGCCAACCAATAGAAATGGTCCGGGTGCATGTAGCTAAAAAGAAGTGA 1254 0.4139 MRLPNAFAKMARQQGWEPRDVILKNSSGKVWEVKTLAVCSQLYFDDGWKQFREDNCLGAMDFVFFTHVEDNVFNFKICELSTRCEKMKVEDSEEQEKEKGDVDDVMELDKEEEGKQQDGDGDEHDPGQDDYGDEVEEKEEDQQQEDEDGDEHDPSEDDDSEEEEEEEEQQDEDGDDYDPGEKHGKEKYDVIELDDEEEEEEQDEDGDEYHSDYFIFLKSQNDEYDSDDDEEVEEEENTELEERDEEESKLTKKRKSHPKVCKVSSKREIGSSSATKAEDAGHENIDAAMYIRCDHPYFIVKPLNGSRGGLLIPHLIIKDFSLRFNKKITLVCCQCQNIPRNQLRYYHRSLPQLTPVNKKHTKEADVSVWTDGRVCANGWLGFCRKNKFTENDTCICEIVLREGQPIEMVRVHVAKKK* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2126 417 SMART B3_2 1 81 IPR003340 GO:0003677
Lja2g2126 417 MobiDBLite consensus disorder prediction 123 175 - -
Lja2g2126 417 MobiDBLite consensus disorder prediction 191 208 - -
Lja2g2126 417 ProSiteProfiles B3 DNA-binding domain profile. 1 81 IPR003340 GO:0003677
Lja2g2126 417 MobiDBLite consensus disorder prediction 86 209 - -
Lja2g2126 417 CDD B3_DNA 1 78 IPR003340 GO:0003677
Lja2g2126 417 MobiDBLite consensus disorder prediction 176 190 - -
Lja2g2126 417 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 3 201 - -
Lja2g2126 417 MobiDBLite consensus disorder prediction 221 256 - -
Lja2g2126 417 PANTHER B3 DOMAIN-CONTAINING 196 412 - -
Lja2g2126 417 SUPERFAMILY DNA-binding pseudobarrel domain 335 399 IPR015300 -
Lja2g2126 417 Gene3D - 1 82 IPR015300 -
Lja2g2126 417 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 196 412 - -
Lja2g2126 417 PANTHER B3 DOMAIN-CONTAINING 3 201 - -
Lja2g2126 417 SUPERFAMILY DNA-binding pseudobarrel domain 1 79 IPR015300 -
Lja2g2126 417 Pfam B3 DNA binding domain 1 79 IPR003340 GO:0003677
Lja2g2126 417 MobiDBLite consensus disorder prediction 86 122 - -
Lja2g2126 417 MobiDBLite consensus disorder prediction 223 243 - -
Lja2g2126 417 Gene3D - 275 416 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2126 Lja-Chr2 23727020 23731012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2126 364 415 B3 DNA Binding Superfamily AT3G06160 38.462 8.33e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja2g2126 B3 3.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2126 - - lja:Lj3g3v3336270.1 424.861