Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2118 ATGTCAAAACCCCTGCACTCCCTGTTTGCACTGCTGTCCATCCCCTTATTCCTCATAACATGTTATGCTGCTGATGGGTCTAACACATCAACACTTTGTGCTCCTTCTAATTGTGGCAATGTTTCCATTGACTACCCTTTCTGGATGCATTCCAACACCATGGCTGCTGGAGAATTTTGCGGCTACCCTGATTTTGGGATTGAATGCTCTGAAGGCAAGGCCATCATGGCTCTCCGAAGTGACACATACCATGTGACAGACATAAACTATGACCAACATTCAATTACTCTTGTTGACATAGATGTACTCAACAAACCATGTCCCAGGGCAAAACACAATGTTTCCATAACCAACCTTCCTCTATCTTTCAACTCATTAGACTTGAACCTCAGTTTCTACTTCAACTGCAGTGCTCACCCTTCATCTGCGGACCCAATAGGGTGCTTGAAGCACAGTAGTAGTGATACTAGGGAGTCTTATGTGTTTGTGAAGGGTAATGAAACAGAGGAGGGTTTTGATTGGGCTAAGCATTGTGTCGAGCATGTTGTGGTCACTGTGAAAGATGATGAGATTGATGCTGTTGGTGGTGGTTTGATCACTGGGTTTGGTGAGGCTATGCAGAAAGGGTTCGTGCTTGATTGGATCAGAGCTGAGGATTGTGCTGAGTGCGAGTTGTCTGGTGGGTTTTGTCGACATAATCAAACCACTAAGCAGTCCAATTGCATGTGCAAAGATGGCAGAGTTGCTGCTAGAAGTTGCATGAAAGGAAAAATGAGCTGGAAGCTGAAAGTCATTATAGGTGTTTCTTCTACTGTGGTAGGAGCACTTGCAGTAATCCTTGGCATCTATGTCTATAAGCGCAAAAAGAACATTAGTTATGCAAAGTCATCATATGTGCAATCTAGAAGCCTCTCTTCAGATCTATCTTTGAATGATACTGAGAAGGGAAGTAGATACTATGGAGTGCACCTCTTCACCTATACCGAACTTGAAGAGGCCACAAACAACTTTGACTCGTCCAAAGAACTAGGAGAGGGCGGCTTCGGGACAGTGTATTTTGGCAAACTGCGGGATGGGCGTTGTGTTGCAGTAAAGAGGTTGTACGAGAACAATTGCAGGAGAGTTGAGCAATTCATGAATGAAGTTGAGATCCTAATTCGTGTAGTCCACCCAAACTTGGTGTCACTCTATGGATGCACTTCACGCCACAGTCGTGAACTGTTGCTTGTGTATGAGTACATTTCGAATGGAACCGTTGCTGATCATCTTCATGGCAAACAAGCCAACCCTGGAAAAATCTCTTGGCGCATTAGAATGAATATTGCTGTGGAGACAGCAAGTGCACTGAAATATCTTCATGCATCTGAAATCATCCACAGAGATGTCAAAACAAATAATATTCTTCTAGACAACCATTTTAGGGTGAAAGTGGCAGATTTTGGTCTTTCGCGTCTTTTCCCAGAGGATGTCACACATGTTTCAACAGCTCCACAAGGGACTCCAGGTTATGTGGATCCAGAGTACCACGAGTGCTACCAACTTACAAGCAAAAGTGATGTCTACAGCTTTGGGGTTGTGCTGATTGAGTTGATATCATCCTTGCCTGCTGTTGACATCACAAGGCATAGACATGAAATCAATTTGGCCAACATGGCTATAAACAAGATTCAAAAGCAAGCATTACATGAGCTTGTTGACCCGACCCTCGGGTTTGAATCAGACTTCAAGGCAAGGAAAATGATAAATGCGGTGGCGGAGTTGGCATTTCAGTGCCTGCAAAGTTCCAAAGATATGAGACCTTCTATGGATGAAGTGTTGGATTCTCTCCAAGATATACAAAGTGATGGCAAATTTAAAAGCCAGCCTGAGGTAATGGATATCTCAACCTCAGCTGATGATGATGTTGTTTTGCTAAAGGATGATCCACCTCCACCATCACCTGATTCAATTGGTATCAGCAAGTCTACAACACCAAATGCTAGCGGATAA 1989 0.4369 MSKPLHSLFALLSIPLFLITCYAADGSNTSTLCAPSNCGNVSIDYPFWMHSNTMAAGEFCGYPDFGIECSEGKAIMALRSDTYHVTDINYDQHSITLVDIDVLNKPCPRAKHNVSITNLPLSFNSLDLNLSFYFNCSAHPSSADPIGCLKHSSSDTRESYVFVKGNETEEGFDWAKHCVEHVVVTVKDDEIDAVGGGLITGFGEAMQKGFVLDWIRAEDCAECELSGGFCRHNQTTKQSNCMCKDGRVAARSCMKGKMSWKLKVIIGVSSTVVGALAVILGIYVYKRKKNISYAKSSYVQSRSLSSDLSLNDTEKGSRYYGVHLFTYTELEEATNNFDSSKELGEGGFGTVYFGKLRDGRCVAVKRLYENNCRRVEQFMNEVEILIRVVHPNLVSLYGCTSRHSRELLLVYEYISNGTVADHLHGKQANPGKISWRIRMNIAVETASALKYLHASEIIHRDVKTNNILLDNHFRVKVADFGLSRLFPEDVTHVSTAPQGTPGYVDPEYHECYQLTSKSDVYSFGVVLIELISSLPAVDITRHRHEINLANMAINKIQKQALHELVDPTLGFESDFKARKMINAVAELAFQCLQSSKDMRPSMDEVLDSLQDIQSDGKFKSQPEVMDISTSADDDVVLLKDDPPPPSPDSIGISKSTTPNASG* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2118 662 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 651 IPR044652 -
Lja2g2118 662 MobiDBLite consensus disorder prediction 616 662 - -
Lja2g2118 662 Gene3D Phosphorylase Kinase; domain 1 309 413 - -
Lja2g2118 662 SMART serkin_6 337 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2118 662 Pfam Wall-associated receptor kinase C-terminal 148 246 IPR032872 -
Lja2g2118 662 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 12 651 - -
Lja2g2118 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Lja2g2118 662 Gene3D Transferase(Phosphotransferase) domain 1 414 625 - -
Lja2g2118 662 Pfam Protein kinase domain 338 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2118 662 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Lja2g2118 662 Pfam Wall-associated receptor kinase galacturonan-binding 33 99 IPR025287 GO:0030247
Lja2g2118 662 SUPERFAMILY Protein kinase-like (PK-like) 318 627 IPR011009 -
Lja2g2118 662 ProSiteProfiles Protein kinase domain profile. 337 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2118 Lja-Chr2 23477605 23490828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2118 219 662 Receptor kinase-like Gene Family AT1G25390 52.288 6.62e-149 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lja2g2118 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2118 - - qlo:115964068 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2118 2 23477605 23490828 Lja2g2118 2 23477605 23490828 ECH