Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2117 ATGACAATCTTTTCAACACCCCAACACATGGCTCTTCCTCTTCTTCCACTACCATTTTCATTCATCTACACCCTTTTCTACCTCTCACTTCTCTTCTATCCAACATATGCCGCTAGTGATGCTGAATTGTACACAGCTTGTGCACCTTTCAGCTGTGGGAATTTCAGCAACATTAGCTATCCATTTTGGAGTAGTAACCAACCAAGTTCTTGTGGGAATCCAAACTTCAAGCTTGATTGCAAGCAAGGCAACGACGAGACAATTGAGATCAAGTCCCAGAAGTTCCCTGTCCTTAATATTAGTCAGAACTCTCTAACTTTGAAGATCGCGACATTGGATTCATTGGGATTGAATGGCGCTTGTCCTAAGCACTATGCCAATGTCAGCTTGGGTTTGGCTTTGTTCAGCTACACCTCTAATGATGATGACTTCATTCTATTATATGACTGCAGGCCTCCTTCATACTCGTATTCGCCTATTTCCACAGCTTCTATATCTTTTACTTGCGGAACAGATAGTGATCCCCATCAAGGATACTTCATGTCAAGCAAAAATGTGGTTAATTTCAATGGTCTTGGGTGCAAAAATAAAATCACGGTTCCAGCGTCAAAAGACGCTTTCCAGAACTCCTTCTTGAATGGCATGACTGTGGAATCTGTTTTAGCTCAAGGATTTGAGGTTGGGTGGAGTGGAGTGGATGGAGATAAATGTGATGGATGCACAAAATCTGGTGGGAGATGTGGATACAATACATCTCTAAATGCACTTATGTGTCTATGTCCTAAAGAGCAATCTAATGGTGGGGTTTGTAGCATAGCCCCGGCATTGTCACCATTACCAGAACCAAGATTAAGACAAACACCACTACAAGCACTATCACCACATTCAGAACCAGATCAGTCTAATTATCATAAGAGTAAAGTGAACTGGTCGATAAAACTCATTATAGGTGCAACGACAGCAGGATTGTCAATATGTTTCACTATATTTTACTTCATATGCAAGTCATCATCATGGCATGGAAAGTTCTGTTTGAAATCAAAAAGTAACCTAGATATTGAAGCATTCTTAAAAAACCAGGGAGCCCTTACTACAGAAAGGTACAAATTCTCATATGTCAAAAAAATTACCGACTCCTTTAAAGTTAAACTAGGACAAGGTGGTTTTGGTGCTGTCTATAAAGGAAAGCTACCCACTGGTAGTCTTGTGGCTGTTAAGATATTGAATTCATCAAAAGGAAATGGTCAAGATTTTGTTAATGAGGTTGCTAGCATAAGTAGGACATCTCATGTCAATATTGTCAATCTTCTTGGATTTTGTTTGGAAGGCCAAAAGAAAGCTCTAATATATGAGTTTATGCCCAACGGATCCCTTGACAAATTTATTTACCAAAAAGGACCTGAAAACATTGCTTCTTTGAGCTGGCAGAATCTGTACCAAATTGCCATAGGGATAGCGCGAGGATTGGAGTACTTGCATAAAGGTTGCAACACTCGAATTTTACATTTTGACATAAAACCACATAATATTCTTTTAGATGAGAATTTTTGTCCTAAAATATCAGATTTTGGGCTGGCAAAGCTTTGTCCTAGAAAAGAGAGTATTATTTCCATGTCAGATGCAAGAGGAACAATGGGGTATGTAGCTCCAGAATTGTGGAATAGACATTTCGGAGGAGTTTCACACAAGGCTGATGTCTACAGCTATGGAATGATGCTACTGGAAATGGTGGGAGGAAGGAAGAACATTAATGCTGAAGCCAGTCACACAAGTGAGATATACTTCCCACATTGGGTGTACAATAGGCTTGAGCTTGGTAGTGATTTGGGACTTAATGGGGTAATGGCCCAAGAAGATAATGAAATCGCAGGTAAAATGACTTTAGTGGGGTTATGGTGCATTCAAACGATTCCAAATGATAGACCTGCAATGAGTAAAGTGATAGATATGTTGGAACGTAACATAGACTCCCTTGAAATTCCCCCAAAACCCATTCTTTCTTCTCCCACTAGATCAATGCCGAAATCTTCCACTATTAGTTGTGAATTCCCTTGA 2055 0.3981 MTIFSTPQHMALPLLPLPFSFIYTLFYLSLLFYPTYAASDAELYTACAPFSCGNFSNISYPFWSSNQPSSCGNPNFKLDCKQGNDETIEIKSQKFPVLNISQNSLTLKIATLDSLGLNGACPKHYANVSLGLALFSYTSNDDDFILLYDCRPPSYSYSPISTASISFTCGTDSDPHQGYFMSSKNVVNFNGLGCKNKITVPASKDAFQNSFLNGMTVESVLAQGFEVGWSGVDGDKCDGCTKSGGRCGYNTSLNALMCLCPKEQSNGGVCSIAPALSPLPEPRLRQTPLQALSPHSEPDQSNYHKSKVNWSIKLIIGATTAGLSICFTIFYFICKSSSWHGKFCLKSKSNLDIEAFLKNQGALTTERYKFSYVKKITDSFKVKLGQGGFGAVYKGKLPTGSLVAVKILNSSKGNGQDFVNEVASISRTSHVNIVNLLGFCLEGQKKALIYEFMPNGSLDKFIYQKGPENIASLSWQNLYQIAIGIARGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRKESIISMSDARGTMGYVAPELWNRHFGGVSHKADVYSYGMMLLEMVGGRKNINAEASHTSEIYFPHWVYNRLELGSDLGLNGVMAQEDNEIAGKMTLVGLWCIQTIPNDRPAMSKVIDMLERNIDSLEIPPKPILSSPTRSMPKSSTISCEFP* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2117 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Lja2g2117 684 SUPERFAMILY Protein kinase-like (PK-like) 367 652 IPR011009 -
Lja2g2117 684 ProSitePatterns Protein kinases ATP-binding region signature. 384 406 IPR017441 GO:0005524
Lja2g2117 684 SMART serkin_6 378 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2117 684 PANTHER RUST RESISTANCE KINASE LR10-RELATED 34 680 IPR045874 GO:0004672
Lja2g2117 684 PANTHER - 34 680 - -
Lja2g2117 684 Pfam Protein kinase domain 381 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2117 684 Gene3D Transferase(Phosphotransferase) domain 1 453 660 - -
Lja2g2117 684 MobiDBLite consensus disorder prediction 662 684 - -
Lja2g2117 684 Pfam Wall-associated receptor kinase C-terminal 177 262 IPR032872 -
Lja2g2117 684 CDD STKc_IRAK 384 653 - -
Lja2g2117 684 Pfam Wall-associated receptor kinase galacturonan-binding 47 110 IPR025287 GO:0030247
Lja2g2117 684 MobiDBLite consensus disorder prediction 669 684 - -
Lja2g2117 684 ProSiteProfiles Protein kinase domain profile. 378 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2117 684 Gene3D Phosphorylase Kinase; domain 1 354 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2117 Lja-Chr2 23467746 23475146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2117 20 682 Receptor kinase-like Gene Family AT5G38260 39.349 6.27e-152 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja2g2117 Pkinase 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2117 - - gmx:102665158 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2117 2 23467746 23475146 Lja2g2117 2 23467746 23475146 ECH