Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2113 ATGGCTGCTAAAAGATTTTTTGATGATTCTGAACAAGACTCTGATAATAAGCCAAGCGACAAACGGATCAGACCTACTACGCCTTCTCTTGCTTCGGTGATTCAAGAAGTGGTTACTATGAAAAACACGCAGAACCAGCTCTTACCATTCTTGGAACCTTTGCTCAAAAGAGTGGTGGGTGAAGAAGTTGAAAAAGTCATGAAGCGATGCTTCCCACCACCATTCATAGCCAGGTCTCCATCACTAAGAATCCAACAAGCACCATCGGAGCAACCATCAACTTTGCAACTCTCCTTCAACAAACGCCTTTCCCTCCCAATCTTCACCGGTAGCAGAATACTCGACATTGAGGGGAACCCCATCACCATAGTTTTGGTCGACAAAACCAACATCAACAACAATGGCCAAGGTGTTCCCACTAGCCTCCCCTACCCCATAAAGCTAGAGCTCGTGGTTCTCAACGGAGATTTTACTCCGGGCGATAACGAGGACTGGACGAGCGAGCAATTCAGGAGGCATGTAGTCAAGGAGAGAGCTGGGAAGCGACCGTTGCTTGCAGGGGAAATGAACCTGATCATGAGGGATGGGATTGCACCAACTGGGGACATTGAGTTCACTGATAACAGTAGCTGGATCAGGAGCAGGAAGTTCAGGATTGCAGTGAGGGTGAGTAGTAACTATCAAGGTGTTAGGATTCGAGAAGGCATCACTGAGGCTTTTGTTGTTAAGGATCACCGTGGAGAATTGTACAAGAAACACCACCCACCAATGCTTCATGATGATGTGTGGCGCCTAGAGAAAATTGGAAAAGATGGAGCTTTCCACAAAAAGTTGACCTCAGAGGGGATTAAAACAGTCCAAGATTTTCTCAAATTAGCAGTTACTGATTCTCCTAGACTAAGAAGGATTTTAGGCCTTGGGATGTCAGAAAAAATGTGGGAAGTCACAATCAAGCATGCACTGACTTGTGACATGGGGAGCAAGATCTACATATACCGTGGACCTCAGTTTACTATTTTTCTGAATCCAATTTGCAAATTAATTAGAGCTGATATCAATGGACAGATATTTTCAAGCAGAGAATTGAACAATATGAACAAGAGCTATATAGACAAATTGGTGAGAGAAGCATATGGCAGGTGGCATAACTTGGAGGAAATTGATGGAGTTTTGAATGAAAACATTGCTTTGTTAACCCAAGGTGATCAAACTGTGGAGCAATTTCCAAGCAATGATCCTGCATCAGTGCTAACATATAATCAGAACTATTACTATGGTGACAAATCTACAGAGGTAGCTAGCTATGTACCAAACAATAATGCACAAATGGGATGCAGTGAGTGGTCACTGAATCCAGCCTACACCAACACCACAACATTGTTTGCAAATGGCTTCCCTTATGGCTTCTCAGCGTCACAATCAGATGGTGACATAACACCTTCAGGTTCGGGCTCTGCGGACGTTGATGGGGCTACAAGGCAACATTAA 1488 0.4409 MAAKRFFDDSEQDSDNKPSDKRIRPTTPSLASVIQEVVTMKNTQNQLLPFLEPLLKRVVGEEVEKVMKRCFPPPFIARSPSLRIQQAPSEQPSTLQLSFNKRLSLPIFTGSRILDIEGNPITIVLVDKTNINNNGQGVPTSLPYPIKLELVVLNGDFTPGDNEDWTSEQFRRHVVKERAGKRPLLAGEMNLIMRDGIAPTGDIEFTDNSSWIRSRKFRIAVRVSSNYQGVRIREGITEAFVVKDHRGELYKKHHPPMLHDDVWRLEKIGKDGAFHKKLTSEGIKTVQDFLKLAVTDSPRLRRILGLGMSEKMWEVTIKHALTCDMGSKIYIYRGPQFTIFLNPICKLIRADINGQIFSSRELNNMNKSYIDKLVREAYGRWHNLEEIDGVLNENIALLTQGDQTVEQFPSNDPASVLTYNQNYYYGDKSTEVASYVPNNNAQMGCSEWSLNPAYTNTTTLFANGFPYGFSASQSDGDITPSGSGSADVDGATRQH* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2113 495 PANTHER OS02G0177800 PROTEIN 1 486 IPR012416 GO:0005516
Lja2g2113 495 MobiDBLite consensus disorder prediction 475 495 - -
Lja2g2113 495 Pfam Calmodulin binding protein C-terminal domain 328 387 IPR046829 -
Lja2g2113 495 MobiDBLite consensus disorder prediction 1 26 - -
Lja2g2113 495 Pfam Calmodulin binding protein-like N-terminal domain 95 245 IPR046831 -
Lja2g2113 495 MobiDBLite consensus disorder prediction 1 22 - -
Lja2g2113 495 Pfam Calmodulin binding protein central domain 257 323 IPR046830 -
Lja2g2113 495 PANTHER PROTEIN, PUTATIVE-RELATED 1 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2113 Lja-Chr2 23426905 23431233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2113 3 389 Calmodulin-binding Proteins AT5G57580 48.855 1.36e-115 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2113 - - gmx:100803213 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2113 2 23426905 23431233 Lja2g2113 2 23426905 23431233 ECH
Lja4g0130 4 998009 1002933 Lja2g2113 2 23426905 23431233 PCT