Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2110 ATGGCGACGCCGTTAACGGGGCTGCAGCACTTGGACGGAGGGGGAGGAGTGGCAGTGCTGTCGAATCGTGTGGCCAGGGTTGATTCTTCCTCCTCCTCCTCCGTCTCCGGCGGTGGCTTCGACCGTTCCCTATTGGAATCGCCAATTCTCATTTTCTGCTTCTTCCACAAAGCGATTCGGAGCGAGCTCGACGCGCTGCATCGATTGGCCATGGCTTTCGCCACCGGGAACCGTGATGATATCCAGCCACTGTTCCAGCGCTACCATTTCCTTAGATCCATGTACAGACACCACACCAATGCTGAAGATGAGGTGATTTTCCCAGCTCTAGATAAACGAGTTAAGAATGTAGCACAGACATATTCTCTTGAACACAAGGGGGAGAGCGATCTATTTGATCATCTATTTGATCTGTTAAACTCTTCCATCCACAACGATGAAAGTTTCCCAAAGGAGTTAGCATCCTGCACGGGAGCTCTGCAGACATCAGTTAGTCAACACATGGCTAAGGAGGAGCAGCAGGTATTTCCACTTCTTATTGAGAAGTTCAGTCTTGAGGAACAGGCATCCTTAGTTTGGCAGTTCCTGTGCAGTATTCCTGTGAATATGATGGCAGAATTTCTTCCATGGCTTTCAACATCCACATCACCTGATGAATCTCAGGATTTGCGGAAGTGCTTAAGCAAGATAGTGCCGGAGGAAAAGCTTCTTCAAAAGGTTATTTTCACCTGGATGGAAGGGAGAAGTAGTGCCGTTACAGTTGAAAATGGTGTAGATCATTCTCAGGTCCGATGTAATCCTAGTCCTTCAACCCATCAGAATGGGAAGAAAAATTGTGCCTGTGAGTCCACAGCGACTGGGAAAAGAAAATATTCTGGATGTATCCTAGATGTTTCTGATACAATGGGAACACATCCTATAGATGAAATACTGCTTTGGCATAATGCTATAAAAAAAGAATTAAATGAGATAGCAGCAGAGACCAGAAGAATACAAAGCTCTGGAGATTTTACTAATCTGTCAGCTTTTAATGAAAGGTTACAATTCATTGCTGAAGTTTTCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCGGTAGATGGAGAGCTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGTCAATTTAATGACTTTCGGTCTTTGATTGAAAGTATTCAAAGTGAAGGAGCAACAACTACTTCGGAAGCTGAATTCTATTCCAAGTTGTGCTCACAGGCTGATCATATAATGGAAACCATACAGAGGCATTTCTGCAATGAAGAAGTTCAGGTTCTTCCCCTTGCACGGAAGCACTTTAGCTTCAGAAAGCAACGTGAACTTGTGTATCAAAGCTTGTGCCTGATGCCTTTGAAATTGATTGAGCGTGTTCTGCCATGGTTGGTTGGATCGTTAACCGAAGATGAAGCAGAGATGTTTCTGAAAAACATGCAATTGGCAGCTCCAGCAACAGATTCTGCTTTAGTCACACTCTTTTGTGGTTGGGCTTGCAAGGCTCGTAAAGATGGTATGTGCTTGTCTTCCAGTGCATCGGGTTGCTGTCCTGCTAAAAATACTTGTCCTTCTGCATTGTCTGGAAGAGATTGTTCAGTATTAGCTGAATCAAATGGGACCCAAAGACCAGTCAAGCGAAACATATTGGAGTTGCAGAAAAATGAAGATGTCCTCAAGACTCCTGAAATTGAAAGTATCCAGAAAATATGTTGTAGTGCCCAGCCCTGTTGTGTGCCAGCTTTAGGAGTCAGCAGTAACAATTTGGGGTTGAGTTCACTTTCTACGGCCAAGTCCTTACGCTCCCTGTCTTTCACCTCTTCGGCCCCATCTCTTAATTCTAGTCTTTTTGTATGGGAAACAGACAGCAGCTTATGTGCGGTTGGCTCTGCAGAGAGACCAATTGATACCATATTTAAATTCCACATAGCTATACGCAAAGACTTGGAGTATTTAGATGTTGAATCTGGGAAGCTTTGTGATGGTGATGAAACAATTATTCAGCAATTTACTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGAAATAGTATTTCCTGCATTGGAATCCAAAGAGGCACTGCATAATGTGAGCCATTCTTACATGCTGGACCATGAGCAGGAAGAAAAATTATTTGAAGATATTTCTCACGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGACATGCAGAGAGCCCATATGTCAGACGATTTTAGTAAAAGTAATTTTGTAATTTCTGATGCCAATGATAGTGATAATATCAGAAAGTACAACGAGCTTGCAACTAAGCTTCAAGGGATGTGCAAATCTATAAGAGTGACCCTGGATCAGCATATTTACAGGGAAGAGCTGGAGCTCTGGCCATTGTTTGGGAAACATTTCTCTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTGACTTCTGCACTCACACAAGATGAACAGAACAAAATGATGGACACGTGGAAACAGGCAACTAAGAACACTATGTTCAATGAATGGCTAAATGAGTGCTTGATAGAGAGTCCAGCATCTATATCGGAGACAGAAACATCAGAGCATAGTACTTCTCAAAGAGGTGTTGACTATCAAGAAAGCTTGGACCTGAATGATCAGAAGTTTAAGCCTGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTTTATCGTGACACGACTCTTGATCCAAGGCGCAAGGATTATCTTGTGCAGAATCTAATGACAAGTCGCTGGATAGCTGCCCAGCAGAAGTTACCTAAAGCTGTATCTGGAGAATCATCTAATAAACAAATAGAAGGATGTTCACCTTCATTTCGGGACCCAGAGAAACAAATATTTGGTTGTGAGCACTATAAGAGAAATTGCAAGATTCGAGCTGCTTGTTGTGGGAAGTTATTTACATGTAGATTTTGCCATGATAATGCAAGTGATCACTCAATGGATAGAAAATCAACAATGGAAATGATGTGTATGCAGTGCCTGACTGTACAGCCAGTTGGGCCTGTGTGCATGTCACCTTCATGCAATGGACTTTCGATGGCAAAGTATTATTGCAACATTTGCAAATTTTTTGACGATGAAAGGAGTGTTTATCATTGCCCATTTTGCAATATATGCCGTGTGGGACAAGGGCTTGGGATTGATTACTTTCACTGTATGAAATGTAATTGTTGCCTGGGTTTAAAATCTGCGTCTCACAAGTGCCTAGAGAAAGGTTTAGAAATGAACTGCCCAATTTGTTGTGATGACTTGTTCACATCAAGTGCAACTGTCAGAGCTCTACCTTGTGGACATTACATGCATTCATCTTGCTTTCAGGCATACACTGTTGGTCACTACACATGTCCAATCTGCAGCAAATCCTTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCTTTGTTGGCTGCTGAGGTACTTCCCGAAGAATACAGAGACCGCCACCAGGACATACTTTGCAATGACTGTGATAAAAAGAGTGCTTCACGCTTCCACTGGTTATATCACAAATGCCGATTTTGCGGATCATACAATACCCGGGTGATCAAGACTGAGGCAACAAATCCCAGCTGCCCTTAG 3699 0.4277 MATPLTGLQHLDGGGGVAVLSNRVARVDSSSSSSVSGGGFDRSLLESPILIFCFFHKAIRSELDALHRLAMAFATGNRDDIQPLFQRYHFLRSMYRHHTNAEDEVIFPALDKRVKNVAQTYSLEHKGESDLFDHLFDLLNSSIHNDESFPKELASCTGALQTSVSQHMAKEEQQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSTSPDESQDLRKCLSKIVPEEKLLQKVIFTWMEGRSSAVTVENGVDHSQVRCNPSPSTHQNGKKNCACESTATGKRKYSGCILDVSDTMGTHPIDEILLWHNAIKKELNEIAAETRRIQSSGDFTNLSAFNERLQFIAEVFIFHSIAEDKVIFPAVDGELSFFQEHAEEESQFNDFRSLIESIQSEGATTTSEAEFYSKLCSQADHIMETIQRHFCNEEVQVLPLARKHFSFRKQRELVYQSLCLMPLKLIERVLPWLVGSLTEDEAEMFLKNMQLAAPATDSALVTLFCGWACKARKDGMCLSSSASGCCPAKNTCPSALSGRDCSVLAESNGTQRPVKRNILELQKNEDVLKTPEIESIQKICCSAQPCCVPALGVSSNNLGLSSLSTAKSLRSLSFTSSAPSLNSSLFVWETDSSLCAVGSAERPIDTIFKFHIAIRKDLEYLDVESGKLCDGDETIIQQFTGRFRLLWGLYRAHSNAEDEIVFPALESKEALHNVSHSYMLDHEQEEKLFEDISHVLSELSVLHEDMQRAHMSDDFSKSNFVISDANDSDNIRKYNELATKLQGMCKSIRVTLDQHIYREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECLIESPASISETETSEHSTSQRGVDYQESLDLNDQKFKPGWKDIFRMNQNELESEIRKVYRDTTLDPRRKDYLVQNLMTSRWIAAQQKLPKAVSGESSNKQIEGCSPSFRDPEKQIFGCEHYKRNCKIRAACCGKLFTCRFCHDNASDHSMDRKSTMEMMCMQCLTVQPVGPVCMSPSCNGLSMAKYYCNICKFFDDERSVYHCPFCNICRVGQGLGIDYFHCMKCNCCLGLKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTVGHYTCPICSKSLGDMAVYFGMLDALLAAEVLPEEYRDRHQDILCNDCDKKSASRFHWLYHKCRFCGSYNTRVIKTEATNPSCP* 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2110 1232 ProSiteProfiles Zinc finger RING-type profile. 1116 1158 IPR001841 -
Lja2g2110 1232 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 28 1232 - -
Lja2g2110 1232 Gene3D nmb1532 protein domain like 637 879 - -
Lja2g2110 1232 Pfam Zinc-ribbon 1163 1220 IPR039512 -
Lja2g2110 1232 Gene3D - 1187 1228 - -
Lja2g2110 1232 Pfam Ring finger domain 1115 1157 IPR001841 -
Lja2g2110 1232 CDD Hr-like 55 177 - -
Lja2g2110 1232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1109 1160 IPR013083 -
Lja2g2110 1232 ProSiteProfiles Zinc finger CTCHY-type profile. 1052 1115 IPR017921 -
Lja2g2110 1232 ProSiteProfiles Zinc finger CHY-type profile. 980 1049 IPR008913 GO:0008270
Lja2g2110 1232 Gene3D nmb1532 protein domain like 308 456 - -
Lja2g2110 1232 Gene3D nmb1532 protein domain like 47 197 - -
Lja2g2110 1232 CDD Hr-like 643 803 - -
Lja2g2110 1232 PANTHER CHY ZINC FINGER PROTEIN 28 1232 - -
Lja2g2110 1232 Pfam CHY zinc finger 987 1062 IPR008913 GO:0008270
Lja2g2110 1232 SMART ring_2 1116 1157 IPR001841 -
Lja2g2110 1232 CDD Hr-like 308 437 - -
Lja2g2110 1232 Pfam Hemerythrin HHE cation binding domain 641 804 IPR012312 -
Lja2g2110 1232 Pfam Hemerythrin HHE cation binding domain 305 439 IPR012312 -
Lja2g2110 1232 Pfam Hemerythrin HHE cation binding domain 56 179 IPR012312 -
Lja2g2110 1232 SUPERFAMILY RING/U-box 1113 1168 - -
Lja2g2110 1232 CDD RING-H2_Pirh2 1115 1158 - -
Lja2g2110 1232 SUPERFAMILY CHY zinc finger-like 979 1044 IPR037274 GO:0008270
Lja2g2110 1232 SUPERFAMILY Zinc hairpin stack 1053 1109 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2110 Lja-Chr2 23352543 23363122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2110 1 1231 C2H2 Transcription Factor Family AT3G18290 65.789 0.0 1661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2110 K16276 - gmx:100791354 2203.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2110 2 23352543 23363122 Lja2g2110 2 23352543 23363122 ECH
Lja4g0134 4 1016807 1031389 Lja2g2110 2 23352543 23363122 PCT