Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2106 ATGAGGTTTCTGTCATGGTTGTGCCCCTGCTTGGATAAGAGGAGAGGCGCGGCTGATGAAGAAGAAGGTGATACCATTGATGGAGATGACTCTTTCAACCTCATCTTCGGCCTCCACACTCTCCAGCTCGCCACCAATTTCTTCTCTGATCTCAACCAGCTTGGCCATGGAGGGTTTGGTCCAGTTTTCAAGGGATTGATGCCAAATGGTCAAGAAGTGGCTGTTAAGAAGCTGTCATTGGATTCTAGACAAGGAGTTAAAGAATTTACCAATGAAGTCAAGCTACTACTCAGACTTCAGCACAAGAACTTGGTTATGTTACTGGGTTGCTGTGTAGAAGGACCTGAAAAGATGCTTGTCTATGAGTATCTCCCAAACAAAAGCCTTGACCACTTTCTATTTGATAAAAAGAGGTCATTGGACTGGGCAACACGATTCAGAATTATAACAGGTGTGGCAAGAGGACTTCTCTACCTGCATGAAGAGGCTCCGGAAAGAATAATTCATAGAGACATTAAAGCTAGTAACATATTGCTGGATGAGAAATTAAGTCCGAAAATTGCAGACTTTGGCTTGGCTAGGCTGTTTCCTGGGGAGGACACTCATTTGCAGACATTTAAGATTTCTGGTACACACGGCTACATGGCTCCTGAGTATGCGATGCGTGGATATCTGTCTGTAAAGGCAGATGTTTTCAGTTTTGGAATTCTGGTGTTGGAAATAGTTAGTGGGAGAAAAAACCATGACGTGAAGCTTGGTTCAGAAAAGGCAGACCTCTTGAACTATGCATGGATGCTTTTTCAAGCTGGGAAGATTATGGATACAATTGACCCAACCCTTATTAAAAAATACAATGGTGATGAGGCAGCAATGTGCATTCAGCTGGGTCTGTTGTGCTGTCAAGCGAGTATAAGCGAGAGACCTGACATGAACTCTGTTCATCTCATGCTTTCAAGTGATTCCTTCACCTTGCCAAAACCAGGTAAACCAGGAATTCAAGGTCGTGTAGGACATTGGACTACAACTACCACTTCTGCATTTTCCAATACTAATGCTAGTACTGCAACCCGGGTCTCAGGAGGTAGTAGCTATGTAGAGGATTACTCGAGAAACTCTATTTCTACTTCTTCTTTTGATGAAGGCAGATGA 1149 0.4343 MRFLSWLCPCLDKRRGAADEEEGDTIDGDDSFNLIFGLHTLQLATNFFSDLNQLGHGGFGPVFKGLMPNGQEVAVKKLSLDSRQGVKEFTNEVKLLLRLQHKNLVMLLGCCVEGPEKMLVYEYLPNKSLDHFLFDKKRSLDWATRFRIITGVARGLLYLHEEAPERIIHRDIKASNILLDEKLSPKIADFGLARLFPGEDTHLQTFKISGTHGYMAPEYAMRGYLSVKADVFSFGILVLEIVSGRKNHDVKLGSEKADLLNYAWMLFQAGKIMDTIDPTLIKKYNGDEAAMCIQLGLLCCQASISERPDMNSVHLMLSSDSFTLPKPGKPGIQGRVGHWTTTTTSAFSNTNASTATRVSGGSSYVEDYSRNSISTSSFDEGR* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2106 382 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 380 - -
Lja2g2106 382 Pfam Protein tyrosine and serine/threonine kinase 52 314 IPR001245 GO:0004672|GO:0006468
Lja2g2106 382 SMART serkin_6 48 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2106 382 ProSiteProfiles Protein kinase domain profile. 48 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g2106 382 Gene3D Transferase(Phosphotransferase) domain 1 124 323 - -
Lja2g2106 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Lja2g2106 382 SUPERFAMILY Protein kinase-like (PK-like) 33 317 IPR011009 -
Lja2g2106 382 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 380 - -
Lja2g2106 382 CDD STKc_IRAK 54 317 - -
Lja2g2106 382 Gene3D Phosphorylase Kinase; domain 1 17 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2106 Lja-Chr2 23324467 23327546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2106 20 334 Receptor kinase-like Gene Family AT4G11490 49.371 9.23e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja2g2106 PK_Tyr_Ser-Thr 7.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2106 - - aprc:113868075 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2106 2 23324467 23327546 Lja2g2106 2 23324467 23327546 ECH