Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2104 ATGACTGGACTTGGTTGCTTGGTGGCTTCTTCCTCATCTGCTCCGAAATCAAAGCATGATGTTTTTCTCAGCTTTAGAGGAGCAGATACACGCTGCACATTTACAAGCCATCTCTATGCTGCATTGTGTCGGAATCAAATCCAGACGTTCATTGACGACAAGGAAATTAACAGAGGAGACACACTGTCACCGACACTCCTTTCAGCTATTGAAACCTCAAAGATTGCAATAACAATCTTCTCTCAGAATTATGCTTCTTCTAAGTGGTGTTTGGATGAACTCCAGAAGATTATTGAATGTAAGGAGAGGAAACAACTTGTTGTGATACCTGTTTTCTATCACATTGATCCATCAGATGTGAGACACCAGAGGGGAAGTTATGAAGATGCATTTACCAAACATGAGGAGCATTTCAGGGACAATCTAATCAAGGTAAATAAGTGGAGAACTGCTCTGCGTACAGCAGCCAACTCAGCAGGATGGGATTCCTCAAATACCAGACTGGAGTCCGAACTAGTTGAAAATATTGTTGAAGATATATTACAGAAGTTGGGTCGTATGAGCCCACATGTTTCAGAGGGGCTTGTTGGAATTGCTAGACACATTGCATGCGTGGAATCATTGTTGTGTTCAGGGTCAACTGATGTACGTATTGTTGGAATATGGGGTATGGGTGGCGTAGGTAAGACAACCATTGCAGATGCTCTGTGTGCAAAACTCTCTTCTCAATACCAGGGATGCTACTCCGTTGCCAATGTGAGGGAAGAATGGAAAAACCATGGAGAAGTTAATTTACGGAATAAACTTCTGTCTGGAATATTGGGGATCCAAAATTTACATGTTAGCAACCCTACTATGAGTTCCACGTTTATTGTAGAAAGGCTTCAACACAAAAAGGTCCTTGTTGTTCTTGATGATGTGAGCGATTCAAAACAAATAGAATATCTTGTTGGAGAGAAATATTGGTTTGGACCTGGGAGTAGAATCATAGTGACAACCAGATATAAAGATGTGTTTGACCAAGGGGTTGGAGTATACCAGGTGATGGAAATGAATTTTGATGAAGCACTAAAGCTTTTTAGCTTGAATGCATTTCAACAAGACCATCCAACGAGGGAATACATACACTTGTCAGAGAGGGCAGTAGAATATGCCAAGGGCATTCCTTTAGCTCTTAAAATTCTCGGTTCATATCTTCGTTCTAAACGACCTGAAGAATGGGAAAGTGCTTTGGAAAAACTGAAGAAAATTCCCAAAGCTGAAATTTATGATGCGTTAAGATTGAGTTATGACGGTTTAGACCATGAAGAGCAGGATATATTCTTAGATATTGCATGCTGTTTGAAAGGAGAGACAAAAAGCCGGATCACAAGAGTATTGGATGGATGTGGCTTTTATACAGATATTGGGATGAGAAGCCTTCAAGATAAGTCTCTTATAACTGTTTCTAAAGACAACACCGTACAAATGCATGATTTGATACAAGAAATGGGTTGGCAAATTGTTCGTGAAGAATCTATGAAGCAGCCTGGAAAACGAAGTCGGTTGTGGGATCCTAAAGAAATTTATGATGTTCTCAAGAATAACAGGGGAACTGACAATATTGAAAGTATAGCGTTGGACACATCTCAAATCAAAGAAGTGACAATAAGCCCTCAAGCTTTTCACAGAATGTACAAGCTAAGGCTTTTGAATTTTCATATGCCCTCATGGGAAAAGAGAAGCAATGTGCTTATTTCTAGAGGTCTTGAATGTATGCCTGATGAATTAACTTACCTCCGATGGGACTGCTTTCCATTGAAATCCCTGCCACCATCGTTTTGTGCAGAGAAGCTTGTTGAACTTAATCTAAAACATAGCCTCGTTGAAGAACTTTGGGATGGAGTGCAGGATCTTGCGAATTTGAAGTCATTATACCTTAGTGGTTGCAACCGCTTGATTGAGCTCCCAGATTTCTCTATGGCCCAAAAACTTGAAGAAGTACATCTTGATGACTGTACAAGTTTGTTGAAGGTTCCTTCATCCATTTTGTCACTTGATAATCTGTTTGCACTCAACCTGAGAGGCTGTAAACAGCTTCGTTACATTCAAAGTGAGAAGCAATCTAGATCTCTTCAATGGTTTACTCTGAGAGGGTGCTCAAGACTTGTAAAGTACGCATTTTGTTCAGAAAAACTGAAGTACCTGAGTTTAGATGGCACGGGAATTGAAGAACTGCCTTCATTAGTTGGACAGGTCAAGGACTCCTCAAGCATCTCTCATGATCATTGTGAAAGACTTCAAAATCTTCCAAATACCATCTATGAGATTGGTTTAGATTCTTCCACTCAGCTTCTTGACTGCCCAAAACTTGAGAAATTACCTCCAACATTTGACTCCTCATTTTCCATGACAACTCTTTATCTCGATAATTGCTCAAATCTGTCACGACTCCCTGACAACCTTGGCATCTTTTCTACACTAAATAAACTTTCATTAAGAGGAAGCAATATTGAGAACTTGCCCAACAGCATAAAACATCTTTCACAGCTGAGGGCCCTAAATTTAAGCAACTCGAGGAGGCTTCGCTCCTTGCCAGAGCTCCCATTTTTGCTACAAGACTTGAATGCAAGTAATTGTGTCTCCCTAGAAACAGTATCAAATTTAGGGATCACAGTGTTGAGAGATTCCTTTGGCAGATTGAAGAAGTTCTCTTTGCTTAGACAGATTCAAGAAGAAGAAAAGATGTCCATTCGTCAAGGTAATTACTTGGGAAGATTTGAGTTTTATAACTGCATAAACTTGGGCCTGATTGCACGCAAGACTCTTATGGAGGAAGCGCTCATTAGAATTCAGCTAGCCGCTTACCTGTCGTCAATGATTGAAGAGTGTTGGGATCCTTATTGTCAAACTGATGAACTTTCTAAGGTCGTTACCCCTGAAGATGTTCAATATATTTCTCGTCCAGTTTATACTAATTTTCCTGGAAATGAAGTGCCAGATTGGTTTATGCATAAAGGAACTGACAACTCAATCATAACCTTTAAACTTTCTGCATGGTGGCATCGTTATTTCAATTTCTTGGGCTTTGGTTTCTGCCTTGTATTAGGACCATCTTGCTCAAATAGGGAGAAAAAACATCATATTGGATTCGTGGCAGGGTGTAGATGCTACTTTGGTGGCAAATTTGCTGGAACTTCCATTATAAAGTCTTCTTGCAGTGATGCTAAATCAGATCAGGAAGGATGGGAAGATCATGCTATGAGTTCCACTTTTATTGTGGAAAGGCTTCAAGGGAAAAAGCTCCTCGTTGTTCTTGATGATGTGACTGATTCAAAACAAATAGAATATCTTGTAGGTGGGAAATATTGGTTTGGACCTGGCAGTAGAATCATAGTGACAACCAGATATAAAGATGTGTTTGACCAAGGGGTTGGAGTATACCAGGTGATGGAAATGAATTTTGATGAAGCACTAAAGCTTTTTAGCTTGAATGCATTTCAACAAGACCATCCAACGAGGGAATACGTACACTTGTCAGAGAGGGCAGTAGAATATGCCAAGGGCATTCCTTTAGCTCTTAAAATTCTCGGTTCATATCTTCGTTCTAAACGACCTGAAGAATGGGAAAGTGCTTTGGAAAAACTGAAGAAAATTCCCAAAGCTGAAATTTATGATGCGTTAAGATTGAGTTATGACGGTTTAGACCATGAAGAGCAGGCTATATTCTTATATATTGCATGCTGTTTGAAAGGAGAGACAAAATGCCAGATCAAAGATATCTACGATTTGTTGCCATACTGGCAAAAATATTCCACCCATTCTACAGATATTATGATAAGAAGCCTTCAGGGTAAGTCTCTTATAACAGTTTCTGAAGATCACACTATCCAGATGCATGATTTGATAAAAGAAATGGATTGGCGAATAATGGACTAA 3918 0.3966 MTGLGCLVASSSSAPKSKHDVFLSFRGADTRCTFTSHLYAALCRNQIQTFIDDKEINRGDTLSPTLLSAIETSKIAITIFSQNYASSKWCLDELQKIIECKERKQLVVIPVFYHIDPSDVRHQRGSYEDAFTKHEEHFRDNLIKVNKWRTALRTAANSAGWDSSNTRLESELVENIVEDILQKLGRMSPHVSEGLVGIARHIACVESLLCSGSTDVRIVGIWGMGGVGKTTIADALCAKLSSQYQGCYSVANVREEWKNHGEVNLRNKLLSGILGIQNLHVSNPTMSSTFIVERLQHKKVLVVLDDVSDSKQIEYLVGEKYWFGPGSRIIVTTRYKDVFDQGVGVYQVMEMNFDEALKLFSLNAFQQDHPTREYIHLSERAVEYAKGIPLALKILGSYLRSKRPEEWESALEKLKKIPKAEIYDALRLSYDGLDHEEQDIFLDIACCLKGETKSRITRVLDGCGFYTDIGMRSLQDKSLITVSKDNTVQMHDLIQEMGWQIVREESMKQPGKRSRLWDPKEIYDVLKNNRGTDNIESIALDTSQIKEVTISPQAFHRMYKLRLLNFHMPSWEKRSNVLISRGLECMPDELTYLRWDCFPLKSLPPSFCAEKLVELNLKHSLVEELWDGVQDLANLKSLYLSGCNRLIELPDFSMAQKLEEVHLDDCTSLLKVPSSILSLDNLFALNLRGCKQLRYIQSEKQSRSLQWFTLRGCSRLVKYAFCSEKLKYLSLDGTGIEELPSLVGQVKDSSSISHDHCERLQNLPNTIYEIGLDSSTQLLDCPKLEKLPPTFDSSFSMTTLYLDNCSNLSRLPDNLGIFSTLNKLSLRGSNIENLPNSIKHLSQLRALNLSNSRRLRSLPELPFLLQDLNASNCVSLETVSNLGITVLRDSFGRLKKFSLLRQIQEEEKMSIRQGNYLGRFEFYNCINLGLIARKTLMEEALIRIQLAAYLSSMIEECWDPYCQTDELSKVVTPEDVQYISRPVYTNFPGNEVPDWFMHKGTDNSIITFKLSAWWHRYFNFLGFGFCLVLGPSCSNREKKHHIGFVAGCRCYFGGKFAGTSIIKSSCSDAKSDQEGWEDHAMSSTFIVERLQGKKLLVVLDDVTDSKQIEYLVGGKYWFGPGSRIIVTTRYKDVFDQGVGVYQVMEMNFDEALKLFSLNAFQQDHPTREYVHLSERAVEYAKGIPLALKILGSYLRSKRPEEWESALEKLKKIPKAEIYDALRLSYDGLDHEEQAIFLYIACCLKGETKCQIKDIYDLLPYWQKYSTHSTDIMIRSLQGKSLITVSEDHTIQMHDLIKEMDWRIMD* 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2104 1305 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1081 1304 IPR044974 GO:0006952
Lja2g2104 1305 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Lja2g2104 1305 SUPERFAMILY L domain-like 489 881 - -
Lja2g2104 1305 Pfam TIR domain 18 194 IPR000157 GO:0007165
Lja2g2104 1305 PRINTS Disease resistance protein signature 839 855 - -
Lja2g2104 1305 PRINTS Disease resistance protein signature 218 233 - -
Lja2g2104 1305 PRINTS Disease resistance protein signature 294 308 - -
Lja2g2104 1305 PRINTS Disease resistance protein signature 385 399 - -
Lja2g2104 1305 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 880 IPR044974 GO:0006952
Lja2g2104 1305 SUPERFAMILY "Winged helix" DNA-binding domain 1216 1303 IPR036390 -
Lja2g2104 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 444 IPR027417 -
Lja2g2104 1305 Pfam NB-ARC domain 206 416 IPR002182 GO:0043531
Lja2g2104 1305 Pfam NB-ARC domain 1067 1211 IPR002182 GO:0043531
Lja2g2104 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1077 1239 IPR027417 -
Lja2g2104 1305 ProSiteProfiles TIR domain profile. 17 184 IPR000157 GO:0007165
Lja2g2104 1305 Gene3D Ribonuclease Inhibitor 525 722 IPR032675 -
Lja2g2104 1305 Gene3D - 351 434 IPR042197 -
Lja2g2104 1305 Gene3D - 1146 1229 IPR042197 -
Lja2g2104 1305 Gene3D - 16 186 IPR035897 -
Lja2g2104 1305 Pfam C-JID domain 987 1041 IPR045344 -
Lja2g2104 1305 Gene3D - 1036 1138 IPR027417 -
Lja2g2104 1305 Gene3D Ribonuclease Inhibitor 723 914 IPR032675 -
Lja2g2104 1305 Pfam Leucine Rich Repeat 611 630 IPR011713 -
Lja2g2104 1305 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 880 - -
Lja2g2104 1305 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1081 1304 - -
Lja2g2104 1305 SMART till_3 18 158 IPR000157 GO:0007165
Lja2g2104 1305 Gene3D - 187 346 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2104 Lja-Chr2 23304865 23311266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2104 777 877 WRKY Transcription Factor Family AT4G12020 38.462 1.29e-09 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2104 - - lja:Lj0g3v0282469.1 2068.89