Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2103 ATGGCTGAAATCACTGAGAATTTGCAGAGCATCAGACCCTCTTTTCCTTTCTTAGACATTGATCCAAGCATGGAACTCCTAAGCCAATTCATGGGGATGAATCCACAACATGTCATGGACAACTCAAACATGAACATGAACATGCAGAACTTGATGCCTTTCTCCTGTGACAGCATTTTGGGCCCTGAAGAGCCAGAGTTTCCTGAAAACTTAGAAGGAACCTTCCCTGGTCTTGTTCATCATGTAAGTCACAATGCATTTCCAGTTTCACTTCCCATTTTTCCAGCAGAAGATGAAATCATTGAAGGTAAAAAGAGGAAGATGATAATGGATATTCAGGAGACCAGTTCAGCAAACTCTACTCCTGCAGTTTCTGAGAGTGGAAGCAGGATAAAAAATAATTCTGGAAGAGGAAAGAGGGCCAAAAGCAATGTAACAGAAGAGGAGAAAGAAAAGGAAGTGGTTCATGTCAGAGCCAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTCAGAAGAGGGAAAATCAATGAGAAACTAAGGTGCTTACAGAACATTGTTCCTGGATGTTACAAGACCATGGGCATGGCAGTAATGTTGGATGAAATCATAAACTATGTGCAGTCTTTGCAGCATCAAGTGGAGTTCCTTTCTTTGAAGCTTACAGCTGCAAGTACCTATTATGACTTCAATTCTGAGACAGATGCTATTGAAACAATGCAGAGAGCAAGGGCATCAGAGGCAAAAGAGTTAGCCAGGTATAAGAGAGAAGAATATGGGGGAATTTCTTGCTTTCAACCAACTTGGCCCCTTTGA 825 0.4182 MAEITENLQSIRPSFPFLDIDPSMELLSQFMGMNPQHVMDNSNMNMNMQNLMPFSCDSILGPEEPEFPENLEGTFPGLVHHVSHNAFPVSLPIFPAEDEIIEGKKRKMIMDIQETSSANSTPAVSESGSRIKNNSGRGKRAKSNVTEEEKEKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSETDAIETMQRARASEAKELARYKREEYGGISCFQPTWPL* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2103 274 Coils Coil 240 260 - -
Lja2g2103 274 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 273 IPR024097 GO:0006355
Lja2g2103 274 CDD bHLH_AtBPE_like 156 238 - -
Lja2g2103 274 MobiDBLite consensus disorder prediction 141 171 - -
Lja2g2103 274 MobiDBLite consensus disorder prediction 114 140 - -
Lja2g2103 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 230 IPR036638 GO:0046983
Lja2g2103 274 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Lja2g2103 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 213 IPR011598 GO:0046983
Lja2g2103 274 SMART finulus 169 219 IPR011598 GO:0046983
Lja2g2103 274 Gene3D - 163 225 IPR036638 GO:0046983
Lja2g2103 274 MobiDBLite consensus disorder prediction 114 171 - -
Lja2g2103 274 PANTHER TRANSCRIPTION FACTOR BEE 1 2 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2103 Lja-Chr2 23295955 23297814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2103 65 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 53.333 2.95e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g2103 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2103 - - gmx:100806942 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2103 2 23295955 23297814 Lja4g0141 4 1072015 1073684 ECH
Lja2g2103 2 23295955 23297814 Lja2g2103 2 23295955 23297814 ECH