Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2096 ATGGAGGAAAATCTACCTCCTGGATTCAGGTTCCATCCTACAGATGAAGAGCTCATCACATATTATCTTACAAGTAAAGTTTCTGACACTAACTTCACATCCAAAGCTGTGGCAGTTGTTGATCTCAACAAGTCTGAACCTTGGGACCTCCCAGGTAAGGCTTCAATGGGGGAGAAGGAATGGTATTTCTTCAGCTTGAGAGACAGGAAATATCCAACAGGGCTTAGAACTAACCGAGCCACTGAATCAGGGTACTGGAAAACTACAGGGAAAGACAAGGAAATTTTTCGAGCTGGGGTTTTGGTGGGAATGAAGAAAACCCTAGTTTTCTATAAGGGTAGGGCTCCAAGGGGTGAGAAAAGCAATTGGGTCATGCATGAGTACAGGCTGGAAAACAAGCATCACTTCAGAACTTCAAAGGACGAATGGGTTGTTTGTAGGGTTTTTCAGAAGACCACAGCAGCCAAAAAACTACAACAAACTTCATCTTCCCAACCAGAATCCCCATGTGACACAACCTCAATGGTCAATGAATTTGGTGATGTTGAGCTGCCAAATCTAAACAACATTGCAAGTTCATCTGGTCATGGACTCACTAACATTAATTCAGCACAAACTTTCAACTATGATCTCATGAGTAACAATAATGTTAACACAAACATGAACTTGACCATGAACTGGCCACCTGCAACTGGTGTTTCCTCACTTCCATGGCCTTCTGGGTTGCTGAATCCAAACATTAATTCTGTAAATTCTTTGCTTCTCAAGGCCTTGCAATTTAGAAGTTATAATCAGCAAAAAGAAGCTGCAGCTGCAGAACATTTTGCAACATCATACATGATGCCTCAAGGAGTTTCCCACCACCTTGGAACTGACCTGAGCTCAAATAATCTCAGTGCTTCTTCTTCAAGAGTTTTAGAGTGTATGCCACAGCAGCAACATCAGCAGGAGCAACCATTCAATTCGGACTCCATTTGGTGA 981 0.4251 MEENLPPGFRFHPTDEELITYYLTSKVSDTNFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKTTAAKKLQQTSSSQPESPCDTTSMVNEFGDVELPNLNNIASSSGHGLTNINSAQTFNYDLMSNNNVNTNMNLTMNWPPATGVSSLPWPSGLLNPNINSVNSLLLKALQFRSYNQQKEAAAAEHFATSYMMPQGVSHHLGTDLSSNNLSASSSRVLECMPQQQHQQEQPFNSDSIW* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2096 326 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Lja2g2096 326 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 264 - -
Lja2g2096 326 PANTHER BNACNNG63190D PROTEIN 2 264 - -
Lja2g2096 326 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Lja2g2096 326 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Lja2g2096 326 Gene3D NAC domain 14 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2096 Lja-Chr2 23215573 23219487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2096 1 326 NAC Transcription Factor Family AT3G18400 58.507 7.10e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja2g2096 NAM 5.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2096 - - gmx:100780030 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2096 2 23215573 23219487 Lja2g2096 2 23215573 23219487 ECH