Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2090 ATGATGAGTGAAATGAAAGGTGCTGCAAGTGCATTGGGAGCCAAAACAGCAAGAGCTTGTGATAGCTGCTTAAAGGTGAGAGCAAGGTGGTATTGTGCTGCTGATGATGCTTTCCTCTGCCATGGCTGTGATAACTCTGTTCACTCTGCAAACCAATTAGCTAGCAGGCATGAAAGGGTGAGGCTTCAATCTGCTTCATCATCTAAGGTGAAGAAATCGTCACAGGCTCAGGCATGGCACAGTGGCTTCACACGCAAGGCAAGAACCCCACGTCACAACAACAAGCACCAACAACAAAGACTCAAAAATGATCAACAAGTGCTTTTCAATAATAACACATTTTTTCCTCTTGTGCCTGAGTTAGGAAGTGAAGAAACTCTGCTTCATGATGAGACTGATGAGGAGCTTCTATGTCTTGTGCCTGTGTTTGATGGATTTGATGAAGGGCTTTGCAGTATATACAAAGATGTGAAGGATGAGAGGCTGGAAAACACCACCATAAAAAGTGATGTTGGTGGTGGTGGTGATGGTGAAGAAAAAGCCTTTGACTTGGAGAATTTTTCCTCCCATTTTCTCCCATCAGATATGGATCTTGCTGAGTTTGCTGCTGATGTGGAAAGCTTGCTTGGTGAAGATTCATTGAAGGGATCAGAACTGGTTAATTGCAAAGATGAACTTGGAGGTGCAATGGTGAAGGTTAAGGATGAAGAATTGGATGCTGATGTGGCTTGTCATTTGGATTCAATACTTGAAATGAATAGTAGTGAGGTTTTTGATTGGAATTTTGAATCAGAATCACTGGTAGCAGCTGAAGAGGAGGAAAAAGTGGCGGTTCCATTGGTGGAAAGTCGCGGTGCTAAGAAGAAGATATTTTTGAGGCTAAACTATGAGGAAGTGATTGCTGCTTGGGATAGCCAAGGTTCTCCATGGACAACACCAACCCCACCTCAGTTCAACTCTGATGATTGCTGGCCAGACTTTTTGGGTTCGAGCGGCGCAAATGTCCAATGCTGCTATGGGGAAGTAAGGAGCTTAACGGGGCAGGCAATAGGGGGTGGTGTAGATGGAGGAAGAGAAGCAAGAGTCTCAAGGTACCGAGAGAAGAGAAGAACACGTTTATTTGCCAAGAAGATAAGGTATGAAGTAAGGAAGTTGAACGCAGAGAAAAGACCAAGAATGAAAGGTCGATTTGTCAAGAGGACTTAA 1206 0.4403 MMSEMKGAASALGAKTARACDSCLKVRARWYCAADDAFLCHGCDNSVHSANQLASRHERVRLQSASSSKVKKSSQAQAWHSGFTRKARTPRHNNKHQQQRLKNDQQVLFNNNTFFPLVPELGSEETLLHDETDEELLCLVPVFDGFDEGLCSIYKDVKDERLENTTIKSDVGGGGDGEEKAFDLENFSSHFLPSDMDLAEFAADVESLLGEDSLKGSELVNCKDELGGAMVKVKDEELDADVACHLDSILEMNSSEVFDWNFESESLVAAEEEEKVAVPLVESRGAKKKIFLRLNYEEVIAAWDSQGSPWTTPTPPQFNSDDCWPDFLGSSGANVQCCYGEVRSLTGQAIGGGVDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2090 401 MobiDBLite consensus disorder prediction 63 103 - -
Lja2g2090 401 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 401 - -
Lja2g2090 401 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515
Lja2g2090 401 SMART bboxneu5 15 62 IPR000315 GO:0008270
Lja2g2090 401 MobiDBLite consensus disorder prediction 63 82 - -
Lja2g2090 401 CDD Bbox1_BBX-like 19 62 - -
Lja2g2090 401 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Lja2g2090 401 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 401 - -
Lja2g2090 401 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Lja2g2090 401 Pfam CCT motif 358 400 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2090 Lja-Chr2 23108845 23111827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2090 5 400 C2C2-CO-like Transcription Factor Family AT1G25440 45.327 3.79e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lja2g2090 zf-B_box 9.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2090 - - gmx:100802113 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0148 4 1117668 1119383 Lja2g2090 2 23108845 23111827 PCT