Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2088 ATGAATGGACTGACAACTGATATCATTGTTCAGCAGAGTTTGAGATCAACGTGGATTTGGATTGGATCTCTTCTTGATACTCCTTTTGAATTAAGCATGTCAGGCTCTCTTAGGAAATCTCAGAGACAAGGATCGAAAAGCAAAGGAAAAGATTCAATGAAAGAAGAAAATATAAACATCATGAAAAATCAAGAGAATTCTCCACAACAAAATGTTTATTGTGAAAAGATTATGGAAGATCCCACCCCTTCTTCCAGCAAAATAAAAAGGAAAACCACGAGCATTTTCCCAGGTGTTCGTCGAAGGAATTGGGGGAAGTATACAGCAGAAATTCGAGACCCATTTCGAGGCGTTAGATCGTGGCTTGGTACGTTTGATTTAGAAAAAGAGGCGGCTAAGGCGTATCTTAAAAAAAGAAGGAATTAA 426 0.3803 MNGLTTDIIVQQSLRSTWIWIGSLLDTPFELSMSGSLRKSQRQGSKSKGKDSMKEENINIMKNQENSPQQNVYCEKIMEDPTPSSSKIKRKTTSIFPGVRRRNWGKYTAEIRDPFRGVRSWLGTFDLEKEAAKAYLKKRRN* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2088 141 SUPERFAMILY DNA-binding domain 94 138 IPR016177 GO:0003677
Lja2g2088 141 CDD AP2 94 135 IPR001471 GO:0003700|GO:0006355
Lja2g2088 141 SMART rav1_2 95 141 IPR001471 GO:0003700|GO:0006355
Lja2g2088 141 Pfam AP2 domain 96 136 IPR001471 GO:0003700|GO:0006355
Lja2g2088 141 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119-LIKE 40 139 - -
Lja2g2088 141 PANTHER DNA-BINDING DOMAIN 40 139 IPR044808 GO:0003700|GO:0009873
Lja2g2088 141 Gene3D AP2/ERF domain 96 140 IPR036955 GO:0003700|GO:0006355
Lja2g2088 141 MobiDBLite consensus disorder prediction 35 66 - -
Lja2g2088 141 MobiDBLite consensus disorder prediction 44 58 - -
Lja2g2088 141 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Lja2g2088 141 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Lja2g2088 141 ProSiteProfiles AP2/ERF domain profile. 95 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2088 Lja-Chr2 23083837 23089815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2088 90 140 AP2-EREBP Transcription Factor Family AT1G49120 64.706 9.55e-16 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja2g2088 AP2 3.3e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2088 - - lja:Lj2g3v0740680.1 177.178