Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2087 ATGGCGAAAGCGAGAGATAGAACCGAAGATTTCAAAGATGCAGTGCGCCACAGTGCTCGCTCTCTCGGCTACGATGAGGCTAAGTTGGCTTCAATTTTGGCATCTTTCATTATTCATAAACCTCCGCAAAGGTCTCCATTTTACAAAGCTGCATTAAAGACGCTTGAGAGTATTGGAGAATTGGAACAGTTTTTGTTGAAGCATAGAAAGGACTATACAGATCTTCACCGCACAACTGAACAAGAGAGAGATAGCATTGAGCAAGAAGTCAGTGCTTTTATTAAAACATGCCAAGAACAAATCGATGTTCTCAAGAATAGTATAAATAATGAAGAGGAAACTTCAAAAGGTTGGCTTGGCATTGCGACTGCAAAGGCTAATGCCGACACCATTGCCCACAAACATGGAGTGGTTCTAATTTTAAGTGAGAGACTCCATCCAGTTACAGCACAGTTTGATCAGCTCAGAGCTGTACGCTTCCAGGATGCTATTAATAGAGCAACACCACGAAGAAAACTTAATCGTGTGACCCGGAAAAATACTACTGAAACCTCTGAATCAGGTGATATGGAGCTCAGAGAACCTGATGAGTTACGCAGTGAGCCTTTAAGAGTCCAACAACAACTCTTGGATGATGAAACACGAGCCCTTCAGGTTGAATTGACTAATCTTCTAGACACAGTCCAAGAAACTGAAACGAAGATGGTGGAAATGTCTGCATTAAATCACCTCATGTCTACACATGTTTTGCAGCAGGCTCATCAAATTGAGCATCTGTATGAGCAGGCTGTTGAAGCTACTAAGAATGTTGAGCTTGGAAACAAAGAACTATCACAAGCCATTCAGCGTAATACCAGCAGCAGGACATTTCTTTTACTCTTTCTATTTGTGCTTACTTTTTCGATCCTCTTTCTTGATTGGTATAGTTAA 930 0.4129 MAKARDRTEDFKDAVRHSARSLGYDEAKLASILASFIIHKPPQRSPFYKAALKTLESIGELEQFLLKHRKDYTDLHRTTEQERDSIEQEVSAFIKTCQEQIDVLKNSINNEEETSKGWLGIATAKANADTIAHKHGVVLILSERLHPVTAQFDQLRAVRFQDAINRATPRRKLNRVTRKNTTETSESGDMELREPDELRSEPLRVQQQLLDDETRALQVELTNLLDTVQETETKMVEMSALNHLMSTHVLQQAHQIEHLYEQAVEATKNVELGNKELSQAIQRNTSSRTFLLLFLFVLTFSILFLDWYS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2087 309 Coils Coil 69 89 - -
Lja2g2087 309 PANTHER SYNTAXIN-18 5 309 - -
Lja2g2087 309 PANTHER SYNTAXIN-18 5 309 - -
Lja2g2087 309 MobiDBLite consensus disorder prediction 176 198 - -
Lja2g2087 309 Pfam SNARE-complex protein Syntaxin-18 N-terminus 6 86 IPR019529 -
Lja2g2087 309 Gene3D - 212 306 - -
Lja2g2087 309 Coils Coil 94 114 - -
Lja2g2087 309 MobiDBLite consensus disorder prediction 174 198 - -
Lja2g2087 309 SUPERFAMILY t-snare proteins 56 273 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2087 Lja-Chr2 23049363 23054095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2087 65 309 SNARE and Associated Proteins AT1G51740 75.203 8.46e-117 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2087 K08492 - gmx:100778011 542.347