Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2057 ATGGATTTAGAATACAAGATCCCTTCTAAAGCTTCGGGTGTTCAGAGCCTTTCGTCCAGCGTACGAAGTACTCCAGAAAAAAATGGCCATTCAAATGATGCTTCAAGAAGTTCCGAACTCCTACAGGAGTTTGTGAAATCTGGTCCAAAGAAGGAACTTCTTCCTACGTGCGTTAATAAGGACAAAAGGAACGTTTCTTCAAAAAGCAGGATGACTGAAACTAAGTCCACTAGTAAGATTATCAAGAAACAAGACTCAAAAAAAGTGTCCAGTCTCAGCAATCAGTCTTCTAAGAAGCAGCATCGCAAGGGAGAAAACCCCATGCGATTCATACCTCCTCCTGACCCGCCTTCTGATTTTGGACATTCAGACTCCTGGATCTGTAAAAATTCTGCTTGCAGAGCTGTTCTATCTAAAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCGCATCTGAATCTGCTCAAGGGGACTCTTGTGGGTTGTCTTGCCATATCGAGTGTGCTCTTCAACATGAAAAAGTGGGAGTTGTTGATCATGGTCAACTGATGCAACTGGATGGTGGCTATTGTTGTGCCTCCTGCGGTAAAGTTACCGGGATACTTGGATGTTGGAAGAAGCAGTTAACTATAGCAAAAGATGCCCGTCGTGTAGATGTACTATGTTACAGGATATATTTGAGCTACAGGCTTCTGGATGGGACTTCCAGATTCAAAGAACTGCACAACATTGTACAAGAGGCAAAGGCTAAACTGGAAATGGAAGTTGGTCCAGTTGATGGGGTTTCTTCCAAGATGGCACGTGGCATTGTCAGCAGACTCCCTATTGCGAGTGATGTACAGAAACTCTGCATTCAGGCTATCCAGAAAGCTGATGAGTGGCTGGCCAATGTAAATCCAGAATCTAGAGAGGATTCACTCCCTGCTGCCTGCAAGTTTGTTTTTGAAGAGGTAACAGCTTCCTCAGTCAAAATCATTTTGATTGAAATGTCGAATGTATCTTCTGAGGACATTAAGGGATACAAGCTCTGGTATTACATGAGTAGGGAAGAATCACACACTGAAGATCCTGTCTGCGTGTTTCCGAAAGCTCAGAGGAGGATTTTGATATCCAGCCTCCAGCCTTGCACAGAATATACTTTTCGCATTGTATCTTTTACAGATGTGGGTGACCTGGGTCATTCTGAGGCCAAGTGTTTCACCAAGAGCATTGAGATATTGGAAAAAGATCCATCTCCACCAGTTGCCTCAAATCATAAAAAGGAGAACCTTGAAACTGGGGGAAATTCTTCTGGCTCCAAAATGGAGCCTGATCCCACAATCGCAGACTCCGGTTTTAAGGTTCGGGACCTTGGAAAAATTCTGCATCGTGCTTGGGCTCAAGAACAAGGTTGCTTTGAGGGGTTTTGCTGTGCTGATAAGAAAAACTGCTGTGCGAAAAGTGAAGTGATCAAACCTAGCAACAACCCAGAAGAGCAGTTGCCTTCAGTTTCACGAGGCCTTGATCTAAATGTTGTTTCAGTGCCTGATTTAAATGAAGATCTAACTCCTCCTTTTGAGTCTTCTAGGGATGAAGATAATGGCTGCACTCTGCAACAGACTGTTGAGGCAGACGACGACGCTGCTTCTCATGATCTGGAGAAAAATTTAGCAAGACCACATGGCAGTGGTGGTTCCCAAACCTGGACCCAAGGGCCAACTGGGGAAGTGCCCGCTGTTGATTCGCGTGTAGATGCCAGTAGGAAAAGGGTAGCAAGCACAAATGAAGACAACCATGATTGTGACAGCACTTTGATAAATGGATCTCCTTTGCGCGTACCTGATGCTTCATCCTCATTAGATGAGAACTTTGAGTATTGCGTGAAAGTAATCCGTTGGCTAGAATGTAAGGGTCATATCAAACAGGAATTTAGGTTGAAGTTGCTGACATGGTTTAGTTTAAGGTCAACAGAACAAGAACGTAGGGTGGTTAATACTTTCATTCAAACTCTGATTGATGATCCAAGTAGTTTGGCAGGGCAACTAGTTGATTCATTTTCTGATATTATATCCAACAAGAGGCCGAGAACTGGGTTGAGTAATAAGGCTGCGGCGCCGAATTAA 2154 0.4378 MDLEYKIPSKASGVQSLSSSVRSTPEKNGHSNDASRSSELLQEFVKSGPKKELLPTCVNKDKRNVSSKSRMTETKSTSKIIKKQDSKKVSSLSNQSSKKQHRKGENPMRFIPPPDPPSDFGHSDSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCASESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLTIAKDARRVDVLCYRIYLSYRLLDGTSRFKELHNIVQEAKAKLEMEVGPVDGVSSKMARGIVSRLPIASDVQKLCIQAIQKADEWLANVNPESREDSLPAACKFVFEEVTASSVKIILIEMSNVSSEDIKGYKLWYYMSREESHTEDPVCVFPKAQRRILISSLQPCTEYTFRIVSFTDVGDLGHSEAKCFTKSIEILEKDPSPPVASNHKKENLETGGNSSGSKMEPDPTIADSGFKVRDLGKILHRAWAQEQGCFEGFCCADKKNCCAKSEVIKPSNNPEEQLPSVSRGLDLNVVSVPDLNEDLTPPFESSRDEDNGCTLQQTVEADDDAASHDLEKNLARPHGSGGSQTWTQGPTGEVPAVDSRVDASRKRVASTNEDNHDCDSTLINGSPLRVPDASSSLDENFEYCVKVIRWLECKGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRTGLSNKAAAPN* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2057 717 MobiDBLite consensus disorder prediction 427 456 - -
Lja2g2057 717 ProSiteProfiles Fibronectin type-III domain profile. 324 423 IPR003961 GO:0005515
Lja2g2057 717 MobiDBLite consensus disorder prediction 11 42 - -
Lja2g2057 717 PANTHER VIN3-LIKE PROTEIN 1 56 712 - -
Lja2g2057 717 MobiDBLite consensus disorder prediction 55 86 - -
Lja2g2057 717 MobiDBLite consensus disorder prediction 439 454 - -
Lja2g2057 717 Gene3D Immunoglobulins 321 421 IPR013783 -
Lja2g2057 717 MobiDBLite consensus disorder prediction 565 618 - -
Lja2g2057 717 MobiDBLite consensus disorder prediction 1 110 - -
Lja2g2057 717 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Lja2g2057 717 MobiDBLite consensus disorder prediction 592 607 - -
Lja2g2057 717 CDD FN3 329 408 IPR003961 GO:0005515
Lja2g2057 717 MobiDBLite consensus disorder prediction 571 585 - -
Lja2g2057 717 PANTHER VIN3-LIKE PROTEIN 2-RELATED 56 712 IPR044514 GO:0010048|GO:0040029
Lja2g2057 717 CDD PHD_VIN3_plant 148 212 - -
Lja2g2057 717 SUPERFAMILY Fibronectin type III 330 408 IPR036116 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2057 Lja-Chr2 22558907 22568263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2057 125 709 PHD Gene Family AT3G24440 49.750 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2057 - - gmx:100780157 1230.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2057 2 22558907 22568263 Lja2g2057 2 22558907 22568263 ECH
Lja4g0166 4 1288895 1295276 Lja2g2057 2 22558907 22568263 PCT