Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2054 ATGGCGAGTCGGAAGGAGGACGAGAAAAACGAGCGCGTCATTCGAGGTCTGCTCAAGCTTGAATCGAATCGGAGGTGCATTAACTGCAACAGCCTGGGACCACAATATGTGTGCACGAATTTCTGGACGTTTGTTTGCACTAACTGCAGTGGAATACACCGGGAATTTACTCATCGAGTGAAATCAATTTCAATGGCTAAATTTACTTCGCAAGAAGTTATTGCACTTCAAGAAGGAGGAAATCAGCGTGCGAAAGAAATTTATTTCAAAGAATGGGATGCACAGCATCAATCTTCCCCCGATAGCAATAACGTTAATAGGCTTCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATACACTGGAGATAAGACTTCTGACAAACCACCAAAAGTAAAGGCGGGCGACAAAGATGATTCCTATGAAAACAGAAGAGCTGAGGCATACCAGGGAGGATCTAGAAGCCCTCCATATGAAGACACATATGAACGTCGTTATAGTGACAGATCTAGTCCAGGTGGAAGGAGTCCGGGATATGATCAAGAAAGCAGGCAATATGGTGATTATAAAAGAAGTCCTGGTCGTCCTCCAATTATCAATGATTGGCGTCGTGAAGATCGTAGAACATCGGATGGAGACTATAAGGTGGAAAGTCAATCTCCTGAACGAGTCAAAGATCTGAATTCTTCAAGCCCACCTGTGGTCCGACCTGTTCGAGATATCTTGGGAGACAATGTAGTACCTCTTCGAATAAGTGAACCCCCCAAACCAAACAGTGGAAGGGCTGCTGACGGCTCATCACTAACACAGAGAACTGCATCTTCTGGAAGCTTGGCATCCAGCATCCAAAACACAGTGGAGGTTAAGCTTGAGACTGCTAAGAGCCTTATCGATTTTGATGCAGATCCTGAACCTATTGCCCCAGCAATTCCTCAAGCTCAACAAATTACTTTGCCTCAACCTGTAATGCAGCCGGCAAATTCCAGTGGTGACAATTGGGCCTCTTTTGATATTGCTTCTGAGGCAAAGGCAACTCCAAGCCCCTCAAATTTAAATCCGCTCGAATCTGTGCTGTCTCAATTGTCTGTGCCAGCATCTTCACCTGCTCATTCTTCTGGAGTACAAGGACCTATTCCAGCATTAGCTCTTTCTTCTGCTTCTGGGGCTGCAAGTGTTAGCGGTTTCTCAGTTTTCCAACCTAGTGGTGCTTCAGTTCCATCTTCTGGATTGGCAACAGCATCGCCTCTTAATAATGTAGGACAGTGGGCCAATTTGCAGCATAAGCAACCATTGTTCCCTGCAGCTGCTAGTCAGCCTACTACCCAACAATTTGCGCGCCCAGTAGGTGGTGCTGTGAACAATCAGCCGTGGAGTGTACCTTCTGTACCCACAGTACAAGGGCATCCAAGTACACAAATGCCAGATGCATACCATCATGCGTCAAATCCTGGCAATGAGGCTATAAACAATATTGTTTCCCAACCTTCTACCGTAGAAATAAAGCCAAGTGGAAGAATAGAACTTCCTGAGGATCTGTTCACTTTCAAATATCCATCCTATCCTGCTCCAGTTCGTGGTTGGCAAATGGGTCATCCCCATGGCATGGGTATCTCAATGCAATATAGTAATGTTGTGCCTGTGCCAAGTTTTCCGCAACCATCAAAGTCAACGAATCCATTTGATGTCAGCAGCAAACCAACCCCAGATCAAGCCCCAACTTTCCCGTCCATGTCATCCTTGCAAGGTGCGCTGCCAAATGTACCATCTTCAGGTGCAAATCACCCTTCAAGCCTGGGCAATGCACCATATGCCTGGACTCAACCCCCATCAGCCCAAGGTGCCCTGTCAAGTACACCACCTTCAGGCACAATGCACCCTTTGGGCCTGGGCAACCAATCACATGCCTGGACTCCACCCATGCCATCCTTGCAAGGTGCCCTGCCTCGTGGACCACCTTCAGGCACATTGCACCCTTCAAGCCTGGGCAACGCATCACATGCCTGGACTCCTCCCCCTTCATCATCATATGTACCAGTCCTGCCTGCACAAGCACAAGCTCATGCATCAGCATTTGGACCAAGCGCATACATGGGACAACAATTGCCAACTAACATGCCCATGCCAAGGCAAGATGTTGGGAGTTACGGCATTGAGGGAGACTTTTTCGGCTTGGCAAATCCAAATCAGCAGCCGGCTGGTAGGTTTCCAATCACTTCCCCCCCTAACACCTTCCCTGCTGGAGGGAACCCATTCGGATAA 2262 0.477 MASRKEDEKNERVIRGLLKLESNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTSQEVIALQEGGNQRAKEIYFKEWDAQHQSSPDSNNVNRLRDFIKHVYVDRRYTGDKTSDKPPKVKAGDKDDSYENRRAEAYQGGSRSPPYEDTYERRYSDRSSPGGRSPGYDQESRQYGDYKRSPGRPPIINDWRREDRRTSDGDYKVESQSPERVKDLNSSSPPVVRPVRDILGDNVVPLRISEPPKPNSGRAADGSSLTQRTASSGSLASSIQNTVEVKLETAKSLIDFDADPEPIAPAIPQAQQITLPQPVMQPANSSGDNWASFDIASEAKATPSPSNLNPLESVLSQLSVPASSPAHSSGVQGPIPALALSSASGAASVSGFSVFQPSGASVPSSGLATASPLNNVGQWANLQHKQPLFPAAASQPTTQQFARPVGGAVNNQPWSVPSVPTVQGHPSTQMPDAYHHASNPGNEAINNIVSQPSTVEIKPSGRIELPEDLFTFKYPSYPAPVRGWQMGHPHGMGISMQYSNVVPVPSFPQPSKSTNPFDVSSKPTPDQAPTFPSMSSLQGALPNVPSSGANHPSSLGNAPYAWTQPPSAQGALSSTPPSGTMHPLGLGNQSHAWTPPMPSLQGALPRGPPSGTLHPSSLGNASHAWTPPPSSSYVPVLPAQAQAHASAFGPSAYMGQQLPTNMPMPRQDVGSYGIEGDFFGLANPNQQPAGRFPITSPPNTFPAGGNPFG* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2054 753 MobiDBLite consensus disorder prediction 549 640 - -
Lja2g2054 753 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Lja2g2054 753 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Lja2g2054 753 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Lja2g2054 753 PANTHER ARFGAP/RECO-RELATED 1 611 IPR044820 GO:0005096
Lja2g2054 753 MobiDBLite consensus disorder prediction 549 674 - -
Lja2g2054 753 PANTHER ARF GTPASE ACTIVATOR 639 753 - -
Lja2g2054 753 PANTHER ARFGAP/RECO-RELATED 639 753 IPR044820 GO:0005096
Lja2g2054 753 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Lja2g2054 753 PANTHER ARF GTPASE ACTIVATOR 1 611 - -
Lja2g2054 753 MobiDBLite consensus disorder prediction 122 281 - -
Lja2g2054 753 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Lja2g2054 753 MobiDBLite consensus disorder prediction 198 223 - -
Lja2g2054 753 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Lja2g2054 753 MobiDBLite consensus disorder prediction 657 673 - -
Lja2g2054 753 Gene3D Arf GTPase activating protein 1 133 IPR038508 -
Lja2g2054 753 MobiDBLite consensus disorder prediction 263 281 - -
Lja2g2054 753 CDD ArfGap_AGFG 11 121 - -
Lja2g2054 753 SUPERFAMILY ArfGap/RecO-like zinc finger 10 123 IPR037278 -
Lja2g2054 753 MobiDBLite consensus disorder prediction 122 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2054 Lja-Chr2 22488276 22496690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2054 11 116 C2H2 Transcription Factor Family AT4G05330 35.135 2.69e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2054 - - gmx:102669541 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2054 2 22488276 22496690 Lja2g2054 2 22488276 22496690 ECH