Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2050 ATGGGTACGATAGGCAACAATTCCCATGAGGGTGATCATCATGGGGTGAACTTCACAGCCCAGAGAGGGTTTTACACAAAACTCAAATCCGGGTTGAAGGAGACGTTCTTCCCTGATGATCCGTTCAGGCAGATCAAGGAGGAGGAGAACCGGTCGCGGAGGATTATTAAAGGGGTCCAGTACTACGTCCCCATCTTCGAGTGGCTCCCAAATTACACACTGCGCCTCTTCATTTCCGACTTTATATCTGGCCTCACCATCACCAGCCTCGCCATCCCTCAAGGCATTAGCTATGCCAAGCTTGCCAATCTTCCTCCCATTGTTGGCCTTTATTCCAGCTTTGTCCCACCTCTGGTGTATGCTATTTTTGGGAGTTCCAGGCACATGGCCGTGGGGACGTTAGCAGCAGCATCATTGCTAATAGGCCAAACTATATCAACCGTCGCAAGCCCAGAAACGGACCCAACTTTGTACCTTCATTTGATCTTCACTACCACTTTTATCACCGGAGTTTTCCAGGCTTGCTTGGGTATTTTTAGGCTAGGGATATTGGTGGATTTCTTTTCCCATTCTACCATCACTGGATTCATGGGAGGGACAGCATTTATTCTCATTGCCCAACAGTTAAAGGGATTTTTTGGTATGAAACATTTTTCAACCAAAACCAACCTTGTTGAAGTGGCCAAGAGCATCATCACCAATAGACATGAGATAAGGTGGGAAACCACAGTTCTTGGACTGGTCTTCCTTGCTTTTCTACAATTTACCAGACACGTGAGGAACAAGAGACCAAAACTCTTTTGGGTATCAGCTATAGCTCCAATGACTGTAGTGATAGTTGGTAGCATTTTTGTGTACCTCGTCCATGGCCAAAAACATGGAATTCCAATCGTGGGCCATCTAGATAGAGGGTTAAATCCTTGGTCCATTCAGTATTTCAACTTTGACAGTAAATATTTGCCAGCAGTGATGCAAGCTGCCCTTATCACTGGAGTCTTGTCATTGGCGGAAGGAATAGCAATTGGAAGAAGCTTTTCTGTTACTGATAACACACCTCATGATGGGAACAAAGAAATGGTAGCTTTTGGCCTCATGAACCTATTTGGTTCTTTCACTTCTTGTTACTTGACTAGTGGACCATTTTCCAAGACAGCTGTGAATTACAATGCAGGGGGTAAAACTGCCATGACAAACGTGGTCCAAGCAGTCCTCATGGCGTTGACACTGCAATTTTTGGCACCACTATTTGGCTTCACACCTCTTGTTGCACTATCAGCTATCATTACATCTGCAATGTTGGGACTGGTTAACTATACCGAAGTTATCTATCTCTACAAAGTTGACAAATTTGATTTCGTTATTTGCATGGCTGCCTTCTTGGGAGTTGCCTTCTTGGGCATGGATTATGGTCTCATGATCTCTGTTGGACTTGGTGTGATTAGAGCACTGTTATATGTTGCTAGACCTGCAACATGCAAGCTTGGAAAGTTAAATGAGTTTGGTATATACAGAGATGTTGAGCAATACCCTGCTTCAACTTTCCCAGGATTGATCATTGTTCAGCTTGGCTCCCCTGTTTACTTTTCAAATTCTGTGTACGTCAAAGAAAGGGTTATGAGGTATATTAAAAGTCAGCAAAGATCTAATGAAGATGTTGTTGAGCAAGTCATACTCGATATGTCAGGAGTGACATCCATTGACACAACTGCAATTGAAGGATTGTTGGAGCTAAACAAAATGTTGGAAAAGAATGGAATTGAGATGTTTTTGGTAAACCCAAGGCTGGAGGTTATGGAGAAACTAATAATATCCAAGTTTGTTGACAAGCTTGGGAAGGAATCGTTCTATCTAACATTGGACGATGCAGTGAAGGCAAGCCAATACTCACTCAAGAAAAATGATAATGGAGACATAGTTCATGAAACTAGTCATGCTTAA 1938 0.4309 MGTIGNNSHEGDHHGVNFTAQRGFYTKLKSGLKETFFPDDPFRQIKEEENRSRRIIKGVQYYVPIFEWLPNYTLRLFISDFISGLTITSLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAIFGSSRHMAVGTLAAASLLIGQTISTVASPETDPTLYLHLIFTTTFITGVFQACLGIFRLGILVDFFSHSTITGFMGGTAFILIAQQLKGFFGMKHFSTKTNLVEVAKSIITNRHEIRWETTVLGLVFLAFLQFTRHVRNKRPKLFWVSAIAPMTVVIVGSIFVYLVHGQKHGIPIVGHLDRGLNPWSIQYFNFDSKYLPAVMQAALITGVLSLAEGIAIGRSFSVTDNTPHDGNKEMVAFGLMNLFGSFTSCYLTSGPFSKTAVNYNAGGKTAMTNVVQAVLMALTLQFLAPLFGFTPLVALSAIITSAMLGLVNYTEVIYLYKVDKFDFVICMAAFLGVAFLGMDYGLMISVGLGVIRALLYVARPATCKLGKLNEFGIYRDVEQYPASTFPGLIIVQLGSPVYFSNSVYVKERVMRYIKSQQRSNEDVVEQVILDMSGVTSIDTTAIEGLLELNKMLEKNGIEMFLVNPRLEVMEKLIISKFVDKLGKESFYLTLDDAVKASQYSLKKNDNGDIVHETSHA* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2050 645 Pfam Sulfate permease family 77 458 IPR011547 GO:0016021
Lja2g2050 645 CDD STAS_SulP_like_sulfate_transporter 511 619 - -
Lja2g2050 645 SUPERFAMILY SpoIIaa-like 509 625 IPR036513 -
Lja2g2050 645 PANTHER SULFATE TRANSPORTER 10 635 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lja2g2050 645 ProSitePatterns SLC26A transporters signature. 106 127 IPR018045 GO:0008271|GO:0008272
Lja2g2050 645 Gene3D STAS domain 488 629 IPR036513 -
Lja2g2050 645 ProSiteProfiles STAS domain profile. 507 626 IPR002645 -
Lja2g2050 645 Pfam STAS domain 512 622 IPR002645 -
Lja2g2050 645 TIGRFAM sulP: sulfate permease 64 622 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lja2g2050 645 PANTHER SULFATE TRANSPORTER 3.5-RELATED 10 635 IPR030316 GO:1902358
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2050 Lja-Chr2 22354707 22360784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2050 3 630 Inorganic Solute Cotransporters AT5G19600 59.936 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2050 K17471 - gmx:100789107 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2050 2 22354707 22360784 Lja2g2050 2 22354707 22360784 ECH