Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2047 ATGGATTCCTCATCTCAAAAGCACTTCCTCTTTCTGCTTGTTCTTGCAATCTTCTTCTCACACACTTGTTCTGTCCACTCCATTAATGCTTCCACAACAACATTCCATTCCTTAAGATCTTTCTGCAGAACCACTCCATACCCAGAAGTTTGCTTCAATTCATTGAAGCTCTCCATATCAATAAACATAAGTCCAAACATCATCACCTACCTCCTTCACTCCCTCCAAACAGCAATATCTGAAGCCACCAAGCTCTCAAATCTATTCCAAAATGCTGGACACCCAAACATCATAGAGAAACAAAGAGGAGCAGTCCAAGACTGCAAGGAACTCCACCAGTCCACCTTGTCTTCTCTGAAAAGATCATTAACTGGGATTGATCATCAATCCCCCAATTCAAAGAACCTTGTTGATGCAAGATCCTACCTCAGTGCAGCCCTCACCAACAAGAACACATGTCTAGAAGGCCTAGACTCTGCTTCTGGTACACTCAAACAGGTTCTGGTGGATTCTGTGATTAACACTTACAAGCATGTCAGTAATTCTCTTTCTATGCTTTCTAAGCAAGGAATTGAGGCTCCTCTCAAAGGACAGAAGAACACGGACCATGTGGAAGAATACGGAGTTCTTGTTGTGGCTGCAGATGGAACTGGGAACTTCAGCACAATCACAGAAGCAATAGCCTTTGCTCCAAATAATAGCATGTACAGGACAGTGATCTATGTGAAAGAAGGGATTTACCAGGAAAATGTGGAGATCCCAAGTTATAAGACTAACATTGTGATGCTTGGAGATGGAAGTGATGTCACTGTCATTACTGGTAACAGGAGCGTTGGTGATGGCTGGACCACTTTCAGATCTGCAACTCTAGCTGTGTCTGGTGATGGGTTTCTAGCAAGAGATATAGCGATTGAGAACAGGGCAGGGCCAGAGAAGCATCAAGCAGTTGCATTGAGAGTGAATGCAGACTTGACTGCATTTTACAAGTGTGCAATTTCTGGTTATCAAGACACTCTTTATGTTCACTCCTTTAGACAATTCTACAGAGAGTGTGACATTTATGGGACCATAGACTTCATATTTGGAAATGCAGCAGTGGTTTTCCAAGAATGTGACATTGTATCCAGAACCCCATTGCCTGGCCAATTCACTGTGATCACAGCACAAGGGAGAGATAATCCAGATGAAGATACTGGCATCTCATTCCAAAACTGCTCAGTTTTAGCGACGGAGGATCTTTACTCCAACTCTAGCAGCTTCAAAAGCTACCTTGGGAGGCCATGGAGGAACTACTCACGCACTGTTTACCTTGAGTCCTACATTGATGACTTTATTGACAAAAGGGGTTGGACCAAGTGGTCTTCTAATGATCAAGGATTGGAGTTGGACACACTGTATTATGGAGAGTATGAGAATTATGGACCTGGTTCAGGGGCAGATGGTCGTGTGCAATGGCTTGGGTACCATTTCATGGATTACAATGATGCCTTTAATTTCACTGTCTCAGAGTTCATTTCTGGAGATGCTTGGCTTGGGTCTACTTCCTTTCCTTATGATGATGGGATTTGA 1569 0.4328 MDSSSQKHFLFLLVLAIFFSHTCSVHSINASTTTFHSLRSFCRTTPYPEVCFNSLKLSISINISPNIITYLLHSLQTAISEATKLSNLFQNAGHPNIIEKQRGAVQDCKELHQSTLSSLKRSLTGIDHQSPNSKNLVDARSYLSAALTNKNTCLEGLDSASGTLKQVLVDSVINTYKHVSNSLSMLSKQGIEAPLKGQKNTDHVEEYGVLVVAADGTGNFSTITEAIAFAPNNSMYRTVIYVKEGIYQENVEIPSYKTNIVMLGDGSDVTVITGNRSVGDGWTTFRSATLAVSGDGFLARDIAIENRAGPEKHQAVALRVNADLTAFYKCAISGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVFQECDIVSRTPLPGQFTVITAQGRDNPDEDTGISFQNCSVLATEDLYSNSSSFKSYLGRPWRNYSRTVYLESYIDDFIDKRGWTKWSSNDQGLELDTLYYGEYENYGPGSGADGRVQWLGYHFMDYNDAFNFTVSEFISGDAWLGSTSFPYDDGI* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2047 522 PANTHER PECTINESTERASE 9 521 - -
Lja2g2047 522 CDD PMEI-like_3 40 188 - -
Lja2g2047 522 SUPERFAMILY Pectin lyase-like 209 519 IPR011050 -
Lja2g2047 522 ProSitePatterns Pectinesterase signature 2. 353 362 IPR033131 -
Lja2g2047 522 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 189 IPR035513 -
Lja2g2047 522 SMART PMEI_2 33 185 IPR006501 GO:0004857
Lja2g2047 522 Gene3D - 208 522 IPR012334 -
Lja2g2047 522 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
Lja2g2047 522 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 187 IPR035513 -
Lja2g2047 522 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 189 IPR006501 GO:0004857
Lja2g2047 522 Pfam Plant invertase/pectin methylesterase inhibitor 38 185 IPR006501 GO:0004857
Lja2g2047 522 Pfam Pectinesterase 210 508 IPR000070 GO:0030599|GO:0042545
Lja2g2047 522 PANTHER PECTINESTERASE 9 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2047 Lja-Chr2 22278597 22281450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2047 37 522 Carbohydrate Esterase AT2G26440 66.019 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2047 - - gmx:100776969 810.061