Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2045 ATGCCAACCCGATCAACCGGAGCCATAAGCCAGGACTGGGAGCCAGTCGTTCTACACAAATCAAAGCCCAAGGCACAGGACCTGCGAAACCCCAAGGCCGTGAACCAGGCTCTGCGAACCGGCGCGGAGGTGCAGACGGTGAAGAAATCCGACGCCGGATCCAACAGGAAAACCGCCGGCCCGGTTGTGAACGCGAGGAAGCTTGACGAGGCGGCGGAGCCCGCGGCGCTGGGGCGCGTGGCGGGGGAGGTGAGGCACGCGATTCAGAAGGCGCGTTTGGAGAAGAAGATGAGTCAGGCTGAGCTGGCGAAGCAGATCAATGAGCGGCCGCAGGTGGTGCAGGAGTATGAGAATGGTAAGGCGGTGCCGAATCAGGCTGTGCTTGCGAAGATGGAGAGGGTGCTCGGGGTGAAGCTTAGGGGTAAAATCGGAAAGTGA 438 0.6119 MPTRSTGAISQDWEPVVLHKSKPKAQDLRNPKAVNQALRTGAEVQTVKKSDAGSNRKTAGPVVNARKLDEAAEPAALGRVAGEVRHAIQKARLEKKMSQAELAKQINERPQVVQEYENGKAVPNQAVLAKMERVLGVKLRGKIGK* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2045 145 Gene3D - 73 145 IPR010982 GO:0003677
Lja2g2045 145 CDD HTH_XRE 87 139 IPR001387 -
Lja2g2045 145 MobiDBLite consensus disorder prediction 43 66 - -
Lja2g2045 145 SUPERFAMILY lambda repressor-like DNA-binding domains 85 139 IPR010982 GO:0003677
Lja2g2045 145 ProSiteProfiles Cro/C1-type HTH domain profile. 88 142 IPR001387 -
Lja2g2045 145 Coils Coil 88 108 - -
Lja2g2045 145 Pfam Helix-turn-helix 88 139 IPR001387 -
Lja2g2045 145 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
Lja2g2045 145 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 144 - -
Lja2g2045 145 SMART mbf_short4 87 142 IPR001387 -
Lja2g2045 145 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2045 Lja-Chr2 22267244 22267973 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Lja2g2045 MBF1 2.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2045 K03627 - twl:119996545 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2045 2 22267244 22267973 Lja2g2045 2 22267244 22267973 ECH