Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2044 ATGTCAGGTCTCTCCAATGGCCACTCCTTCCAAATCCCCACCGTCAAGTTCAACAAGCTCTTCATCAATGGACAATTTGTCGATTCCCTTTCAGGAAAGGAGTTTGAGACAATTGATCCAAGAACAGAAGAGGTGATTGCAAGGATCTCTGAGGGAACAAAAGAAGACATTGATGTTGCTGTCCAAGCGGCACGTGTCGCTTTTGATAGCGGTCCATGGCCTCGCATGCCTGGCGCTGAAAGAGGAAGAATTATGATGAAATGGGCAGAGCTAATTGATCAAAACATAGAAGAAATAGCAGCACTAGATGCCATTGATGCTGGAAAGTTATTCCAATGGTGTAAGAACGTTGACATTCCTGGAGCAGCAAACACTATACGGTACTATGCTGGTGCTGCTGATAAAATTCATGGTGAGGTGTTGAAACATTCTCGGGAGATGCATGCGTATACTCTATTAGAACCAATTGGTGTTGTGGGACACATCATTCCCTGGAACTTCCCTAGCACCATGTTTGTTGCCAAGGTTGGTCCTTCCTTAGCTGCTGGTTGCACAATGGTTCTCAAGCCTGCTGAACAAACACCACTTTCAGCTTTGTTTTATGCTCATTTAGCTAAGCAGGCTGGAATTCCAGATGGAGTGCTCAATGTAGTGCCCGGATTCGGTCACACTGCAGGTGCTGCAATAAGCTCTCACATGGACATTGATAAGGTCAGCTTCACTGGTTCAACAGAAGTAGGCAGACAAGTAATGCAAGCTGCTGCTAAGAGTAATTTGAAACCAGTTTCACTTGAATTAGGAGGCAAGTCACCCCTTGTAATCTTTGATGATGCTGATGTGGATAAAGCTGCTGAGCTTGCTCTCTTGGGCATTCTATTTAACAAGGGAGAAATTTGTGTTGCCGGCTCCCGTGTATTTGTTCAGGAAGGAATCTATGATGAGTTTGAGAAGAAGTTGGTGGAGAAAGCAAAAGCTTGGGTAGTTGGTGATCCTTTTGATCCTAAAGTTCAACAAGGGCCTCAGGTTGACAAAAAGCAATTTGAAAAAATACTTTCTTATATTGAGCATGGAAAAAGAGAAGGGGCTACCCTTTTGACAGGGGGTAAAAGAGTGGGCAACAAGGGCTACTACATTGAACCTACAATTTTCTCCAATGTTAAGGAGGACATGCTTATAGTTCAGGATGAAATATTTGGCCCTGTGATGGCCCTGAAGAAGTTTAAGACTATAGAAGAAGGAATTAAAAGTGCCAACAATACCAGATATGGTCTAGCAGCAGGCATTGTGACCAAGAGCTTGGATACAGCAAACACTGTGTCAAGGTCCATTCGTGCAGGCGTTGTTTGGATAAACTGCTACTTTGCCTTTGGGAATGACATTCCTTATGGAGGTTACAAGATGAGTGGATTTGGAAGAGATTTTGGATTGGAAGCACTACACAAGTATCTACAAGTTAAATCTGTTGTGACTCCCATTTACAATTCTCCTTGGCTTTGA 1497 0.4342 MSGLSNGHSFQIPTVKFNKLFINGQFVDSLSGKEFETIDPRTEEVIARISEGTKEDIDVAVQAARVAFDSGPWPRMPGAERGRIMMKWAELIDQNIEEIAALDAIDAGKLFQWCKNVDIPGAANTIRYYAGAADKIHGEVLKHSREMHAYTLLEPIGVVGHIIPWNFPSTMFVAKVGPSLAAGCTMVLKPAEQTPLSALFYAHLAKQAGIPDGVLNVVPGFGHTAGAAISSHMDIDKVSFTGSTEVGRQVMQAAAKSNLKPVSLELGGKSPLVIFDDADVDKAAELALLGILFNKGEICVAGSRVFVQEGIYDEFEKKLVEKAKAWVVGDPFDPKVQQGPQVDKKQFEKILSYIEHGKREGATLLTGGKRVGNKGYYIEPTIFSNVKEDMLIVQDEIFGPVMALKKFKTIEEGIKSANNTRYGLAAGIVTKSLDTANTVSRSIRAGVVWINCYFAFGNDIPYGGYKMSGFGRDFGLEALHKYLQVKSVVTPIYNSPWL* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2044 498 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 486 IPR016162 GO:0016491
Lja2g2044 498 SUPERFAMILY ALDH-like 11 494 IPR016161 GO:0016491
Lja2g2044 498 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 292 303 IPR016160 GO:0016491
Lja2g2044 498 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 264 271 IPR029510 GO:0016491
Lja2g2044 498 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 10 498 - -
Lja2g2044 498 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 10 498 - -
Lja2g2044 498 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 268 457 IPR016163 GO:0016620
Lja2g2044 498 Pfam Aldehyde dehydrogenase family 27 488 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2044 Lja-Chr2 22220101 22230232 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2044 2 498 Aldehyde Dehydrogenase Gene Family AT3G24503 71.142 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2044 K12355 - gmx:100783920 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0172 4 1359480 1364097 Lja2g2044 2 22220101 22230232 PCT