Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2043 ATGAATTCCATGTTCGATAAGCACATTCAAACTTGGATTTTTACGTCTGCCCCCACTGCTTCTTTTCAAGGAATGATTATACGATGTAGCTCAATCATAGCGGAAATAAGGAGAGCTATATTTAGGTGTCTTGTGTGGCGGATTACTGAACCTACTTTATGCTTGAGGGAAGGGAACACTGGTTCACAACCAATGCAGGTAATGCACACCTATGGTTTATTTATACCTGAAGGAGGAATGCTTCACACAGTTAGCTTGCTGATGCAGGACAAGCTGGTAGATGCTGGAAAGCCAGGTGACAGAAGCTATATGAGTGTCAGGGTTGGGCCAACTCAGAGAACTTCCAAGTCATTATTCAAGAAGTTCGTTGAGTCCAGGATGCTGATAGAGGATACTACGGAGGTGGCTAAACTGAAGGAGCTGTCAAAAGATCCGGATATATATGAAAATGATGTGAAGAAAGATCTTCTATGTCAGCTTTTTAGTGGCAATGCTTTGACGTTGGTATCCGGTGCTAGCTTCGGTGGTGATATAAATATTCTTCTCGTTGGTGATCCTGGGACAAGCAAGTCCCAACTACTACAGTACATACACAAATTATCTCCACGTGGCATTCACACAAGTGGAAGGAGTTCTGCTGTTGGACAGACAGCTTATGTGACCAAATATCCTGAAACAGGGGAAACTGTTCTTGAGAGTGCTGCCCTAGTTTTGAGTGATCGTGGTATCTGCTATATAGATGAATTCGGTGAAATGTCTGACAATGCCAGGAGCATGTTACAAGAGGTTATGCAACAACAAACCGTTTCAATAGCAAAGGCAGGCATTATTGCTTCCCTTAATGCTAGGATGTCGATGTTGGCTTGTGCAAATCCAAGTGGGTCACGATATAATCCTCGCTTGACCGTCATTGACAATATACACCTTCTTCCCACTCTTCTGTCCAGGTTTGATTTTATCTACTTAATCCTTCACAAGGCTGACAAACAGACTGACAGGCGACTTTCCAAACACATTATTTCCCTCCACTTTGAGAATCCTGATAACATGGAGCAGGATGTCTTGGACTTCTCTACAAAAAGCCACAAGTCAAAGAAAGAATGTATCCAAAAGGATTCAGAACCAGCATCTGAAGAAGCACTGGTGGATGCAGGGGCTGCTATTGCTGCAGCAGAGGGAATGGGTTGGCTCCTTTATATTGTCTTGTTCATCAGGCCCTGTCGTGCATGCATCACCAAGTATGGGTTGAGCTCCTCCAAGCTCCCCATAGCCATGGGGTTTCCACTAAAAGCCTAG 1296 0.4398 MNSMFDKHIQTWIFTSAPTASFQGMIIRCSSIIAEIRRAIFRCLVWRITEPTLCLREGNTGSQPMQVMHTYGLFIPEGGMLHTVSLLMQDKLVDAGKPGDRSYMSVRVGPTQRTSKSLFKKFVESRMLIEDTTEVAKLKELSKDPDIYENDVKKDLLCQLFSGNALTLVSGASFGGDINILLVGDPGTSKSQLLQYIHKLSPRGIHTSGRSSAVGQTAYVTKYPETGETVLESAALVLSDRGICYIDEFGEMSDNARSMLQEVMQQQTVSIAKAGIIASLNARMSMLACANPSGSRYNPRLTVIDNIHLLPTLLSRFDFIYLILHKADKQTDRRLSKHIISLHFENPDNMEQDVLDFSTKSHKSKKECIQKDSEPASEEALVDAGAAIAAAEGMGWLLYIVLFIRPCRACITKYGLSSSKLPIAMGFPLKA* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2043 431 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 21 359 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja2g2043 431 ProSiteProfiles MCM family domain profile. 150 339 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja2g2043 431 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 21 359 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja2g2043 431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 345 IPR027417 -
Lja2g2043 431 PRINTS Mini-chromosome maintenance (MCM) protein family signature 175 190 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja2g2043 431 PRINTS Mini-chromosome maintenance (MCM) protein family signature 286 298 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja2g2043 431 PRINTS Mini-chromosome maintenance (MCM) protein family signature 313 321 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja2g2043 431 PRINTS Mini-chromosome maintenance (MCM) protein family signature 262 275 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja2g2043 431 PRINTS Mini-chromosome maintenance (MCM) protein family signature 234 248 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja2g2043 431 Pfam MCM P-loop domain 145 343 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja2g2043 431 SMART mcm 14 392 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja2g2043 431 Gene3D - 131 390 IPR027417 -
Lja2g2043 431 SUPERFAMILY Nucleic acid-binding proteins 21 101 IPR012340 -
Lja2g2043 431 Gene3D - 18 130 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2043 Lja-Chr2 22201618 22205974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2043 1 379 Core DNA Replication Machinery Family AT2G16440 54.894 2.69e-154 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2043 K02212 - gmx:100782586 473.011