Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2042 ATGGCAAATCTCAGCAATGGCCTCTGCCATATAAACTCCTTTGTCAACATTCCAACAGTGAAGTTTACAAAGCTTTTCATCAATGGAGAATTCGTGGATTCAGTTTCAGGAAAAACGTTTGAGACAGTTGATCCAAGAACAGAGGAAGTGATTACAGAGATAGCAGAGGCTACCAAAGAAGATGTTGATATTGCTGTGAAGGCTGCACGTAAAGCATTCGATTCTGGTTCATGGCCACGCATGACTGGTGCTGGGAGAGCAAAGATTATGCTGAAGTGGGCAGAGCTAATAGAACAGAACATAGAAGAATTAGCAGCATTGGACACCATTGATGGTGGGAAGCTATACAGTTGGTGTAAGGCTGTGGACATTCCTGAAGCCGCCAACCTCCTGCGTTACTATGCTGGTGCTGCTGATAAAATCCATGGAGATGTGTGCAAAACTTCCAGGGACCTCCACTTGTATACTTTAATGGAACCGGTTGGTGTAGTTGGACACATTATTCCTTGGAATTTCCCCACCATCATGTTCTTTGGTAAGGTCAGCCCTGCCTTAGCTGCTGGCTGCACCGTGATCCTCAAGCCTGCTGAGCAAACACCACTCTCAGCACTCTTCTATGCTCATCTTGCAAAGCAGGCTGGTATCCCAGATGGAGTGCTCAATGTAGTACCCGGATTTGGTTCAATTGCTGGAGCTGCAATTACCTCACATATGGACATTGATGCTGTCAGTTTTACAGGTTCATCAGAAACAGGTCGTCAAGTAATGATGGCTGCAGCCATGAGCAATTTGAAACCTGTTTCGCTCGAATTAGGAGGCAAGTCACCGGTCTTGATTTTCGATGATGCTGATGTAGACAAAGCTGTTGAACTTGCTCTCTTTGGCATCCTGCACAACAAGGGAGAAGTCTGTGTTGCATTCTCCAGAGTTTTTGTCCAGGAAGGGATTTATGATGAGTTTGAGAAGAAGGTGGTGGAGAAGGCAAAAACTTGGGTAGTGGGAGACCCTTTTGATCCTAAAGTTCAGCAAGGCCCCCAAACTAGTAAGGCACAATTTGATAAAATCCTTTCCTATATTGAGCATGGAGTGAATGAAGGAGCCACACTGTTGACTGGGGGCAAGACAGTGGGAAACAAGGGATACTATATTGGACCTACTATCTTTTCCAATGTTAAGGAGGACATGGTGATAGCAAAAGATGAAATATTTGGACCTGTGATGGTACTTTCTAAGTTCAAGATCATTGAGGAAGCAATTGAAAAAGCTAACAGCACAAGATACGGCCTAGCAGCAGGGATTGTGACCAAGAACTTGGACATTGCCAACACTGTCTCGAGGTCGATCCGTGCCGGCATCATTTGGATCAACTGCTTCTTTGCCTTTGACATTGACTGCCCTTTTGGAGGGTATAAGATGAGTGGATTTGGAAGAGATTATGGACTGGAAGCACTTCACAAGTATCTTCAAGTTAAATCAGTTGCAACTCCAATTTACAATTCACCATGGCTTTGA 1512 0.4458 MANLSNGLCHINSFVNIPTVKFTKLFINGEFVDSVSGKTFETVDPRTEEVITEIAEATKEDVDIAVKAARKAFDSGSWPRMTGAGRAKIMLKWAELIEQNIEELAALDTIDGGKLYSWCKAVDIPEAANLLRYYAGAADKIHGDVCKTSRDLHLYTLMEPVGVVGHIIPWNFPTIMFFGKVSPALAAGCTVILKPAEQTPLSALFYAHLAKQAGIPDGVLNVVPGFGSIAGAAITSHMDIDAVSFTGSSETGRQVMMAAAMSNLKPVSLELGGKSPVLIFDDADVDKAVELALFGILHNKGEVCVAFSRVFVQEGIYDEFEKKVVEKAKTWVVGDPFDPKVQQGPQTSKAQFDKILSYIEHGVNEGATLLTGGKTVGNKGYYIGPTIFSNVKEDMVIAKDEIFGPVMVLSKFKIIEEAIEKANSTRYGLAAGIVTKNLDIANTVSRSIRAGIIWINCFFAFDIDCPFGGYKMSGFGRDYGLEALHKYLQVKSVATPIYNSPWL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2042 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 269 276 IPR029510 GO:0016491
Lja2g2042 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 27 491 IPR016162 GO:0016491
Lja2g2042 503 SUPERFAMILY ALDH-like 15 499 IPR016161 GO:0016491
Lja2g2042 503 PANTHER CYTOSOLIC ALDEHYDE DEHYDROGENASE 9 503 - -
Lja2g2042 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 297 308 IPR016160 GO:0016491
Lja2g2042 503 Pfam Aldehyde dehydrogenase family 31 493 IPR015590 GO:0016491
Lja2g2042 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 273 462 IPR016163 GO:0016620
Lja2g2042 503 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 9 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2042 Lja-Chr2 22187990 22191800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2042 4 503 Aldehyde Dehydrogenase Gene Family AT3G24503 67.665 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2042 K12355 - gmx:100784449 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0173 4 1374761 1380009 Lja2g2042 2 22187990 22191800 PCT