Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2026 ATGCTGATGGACCAGAACAACAACACCAACCTTAACACTACCAACAACAACACCAACAACGATGTGATCATCGCACCGTTCATAATGAAGACTTACCACATGGTGAACGATCCCACCACCGATAACCTCATCAAGTGGGGCCCAGCTAACAACAGCTTCATCGTCCTCGACCCTCTTGATTTCTCTCACTCTCTCCTCCCTGCTTTCTTCAAGCACAATAATTTCTCAAGCTTCGTTCGCCAGCTCAACACCTATGGTTTCAGAAAGGTGGATCCTGATCGGTGGGAGTTTGCAAACGAGTGGTTCCTTCGTGGGCAGAAGCATTTGTTGAAGAATATCACACGGCGGAAGCACGGTGGTGGCGGTGGTGGCGGTGGCGGTGGAAGGAATGGTCATGGTCATGGCCATGGCTATGATCATTATGGTTCGCATTTGGACTTGGAAGATGATGTTATGGTGATGGAGATTGCGAAGCTGAAGGAGGAGCAGAAAGCTTTGGATGCAGAGCTTCAAGGGATGAACAAGAGGTTGGAGACGACGGAGAAACGACCGCAGCAGATGATGGCTTTTCTCAGCAATGTCGTCGAGGATCCTCAGATTCTCTCGAGGATACTTCTCGAGAGGGAGAGGAAGCAGCAGCAGCTCGCTGACAACAAGAAGCGCCGCCTCATACCGCCAACGACGGCGGCCTCTTCTTCCTCCTCCTCCGGCTTGGCGGTGACCAATTCCGTCAAGACGGAGTTCGAGGAAGACGAGGCGACGGTCGGTAACGTGATGTCCTCCTCGCCGGAGACAGGTTTTGAAATTGAAAACTCTCGCCGGGTGGCGGCGCCGCCGCCGGATTGGTGGGGGCAGAGGCGGGATGGCCAGCAGGGTTATTATGATTGTGTTGCCGCTCCGACGCCGTTGACGGTGGTGTCTCCGCCGGCGATGGGAGGAGCATTTTTAGGGTGGGAAGATAGGGAGAGCATGGGGCGTGTGAGCATAATTAGTGAAATGGCGGCGGAGAATAGTTCGCTGCCACCTTGTCCGTTTTCGCTATTGGAAGGTTATGGTGTTAGTACTTCTTCCCAATACTGA 1080 0.5324 MLMDQNNNTNLNTTNNNTNNDVIIAPFIMKTYHMVNDPTTDNLIKWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNITRRKHGGGGGGGGGGRNGHGHGHGYDHYGSHLDLEDDVMVMEIAKLKEEQKALDAELQGMNKRLETTEKRPQQMMAFLSNVVEDPQILSRILLERERKQQQLADNKKRRLIPPTTAASSSSSSGLAVTNSVKTEFEEDEATVGNVMSSSPETGFEIENSRRVAAPPPDWWGQRRDGQQGYYDCVAAPTPLTVVSPPAMGGAFLGWEDRESMGRVSIISEMAAENSSLPPCPFSLLEGYGVSTSSQY* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2026 359 SUPERFAMILY "Winged helix" DNA-binding domain 25 116 IPR036390 -
Lja2g2026 359 MobiDBLite consensus disorder prediction 212 242 - -
Lja2g2026 359 Pfam HSF-type DNA-binding 27 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g2026 359 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 25 279 - -
Lja2g2026 359 MobiDBLite consensus disorder prediction 225 242 - -
Lja2g2026 359 ProSitePatterns HSF-type DNA-binding domain signature. 66 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g2026 359 Gene3D - 19 117 IPR036388 -
Lja2g2026 359 Coils Coil 156 183 - -
Lja2g2026 359 SMART hsfneu3 23 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g2026 359 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 279 IPR027725 -
Lja2g2026 359 MobiDBLite consensus disorder prediction 114 137 - -
Lja2g2026 359 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g2026 359 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g2026 359 PRINTS Heat shock factor (HSF) domain signature 27 50 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2026 Lja-Chr2 21972755 21974447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2026 23 230 HSF AT3G24520 64.286 5.83e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja2g2026 HSF_DNA-bind 6.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2026 K09419 - gmx:100794896 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2026 2 21972755 21974447 Lja2g2026 2 21972755 21974447 ECH