Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2012 ATGGGGGAAGGTGAGGGGGGTGATTGCGCTCCGGCGAATGTGCCGTCGTCATCGGAGGAGGCGGCGGCGGGAGGGGTGGTGGCGGCGTTGGATGCTCCGGCGAAGAAGCTTGCGAGGCAGCTGGATTTCACCGCCTTGTCGGAGCAATCGCAATCGCAGCCGCAGGTGGTGCAGCAGCTGCAGAGTGTGGCGCCGCAGCCGGTGACTGTGTTGCCGTCTCCTCCTCCTCCGCCGCCGCAGGCACCTCTCGCTTCGGTGAGAGTTGGGAAACCAGAATCTCCGAAATCAAAACCAAGACCTAACTTTGAAATAAAAGAAGCTACTCCAAAGAAGCAAAAGCAGTGCAATTGTAAACACTCTAAATGCTTAAAACTATATTGTGAATGTTTTGCATCGGGAATATATTGTGAGGGTTGCAACTGTGTAAATTGTTTCAACAATGTTGAAAATGAAGCTGCTAGACGGGAAGCTGTTGAAGCTACTTTGGAGCGTAATCCAAATGCATTTAGGCCCAAAATTGCAAGCAGCCCTCATGGAACACGTGATAGCAAGGAGGAAGCTGGGGAAGGTTTAATATTAGTAAAACATAACAAGGGGTGCCACTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAATGCTTCCAAGCCAATGTTCTTTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAGGCTTTATTTCATGGAGATCAAAATAACAATGTGACATATATTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGTGCCTCTGGCTTTTCATCTCCACCAGTATCTAAGAAAAGAAAAGGTCAGGAACTCTTCTTTTGGCCTACGGTCAAGGATCCGTCAATCGGAAAGTTGGGGCAGCAGGTAAACCATGTCAAAGGTCCAGCACCCTCCCCATCCTTGTCACCTGCCCCAGGTGCTCGTGCGGGAACTGCAGCACTAGGTCCTTCAAAATTTACGTACAGGTCTCTCTTAGCAGACATTATACAACCACAGCACCTCAAGGAGCTTTGTTCAGTTCTGGTGCTAGTATCCGGACAAGCTGCAAAAACACTTGCAGACCAGAAAAATGCAATGGAAAAGCATACAGAAGATCAGATGGAAACTTCTCTTGCTTTTTCAACTCAAGAGCAATTACCTAGTCAGAAGGAAGGTGATGTTCAGAAGGCCATGGCTGATGATTGTTCGAGTGCGAACCAAACAGAGAAAATCAGTCCAGATAATTCCAGTTCAGATGGTGCTGATGTCCCGAAAGGGAGACCAATGTCTCCTGGGACTTTAGCCTTGATGTGTGATGAGCAAGATACAATGTTCATGACAGCTTCCTCCCCCGTTGGGCCAGCTACCCATGCTTGCAACACATCTTCACAGTTTCCTTATGGACAAGGAATGACAGAGGTCTATGCTGAGCAAGAAAGGATTGTATTAACAAGGTTTAGAGATTTTCTCAATAGGGTTATCACCATGGGAGAAATAAATGAAACAAAGTGTTCGTCATTGGCTAGAAGTGAACTAGAAAATCAGAATGACCCGAGCAGCAATGGCATTGGAAATACCAGTACTGAGATAGTGCATCAGCAGGGAGCCACTAGCAATGGGGTTCCTAAAGCTGTTGTTCCACCCGTGGCCACAACTTCAGCATCTATGATCCCTGAAAATGTTGTTACTGAGAATGGGGAAGCAAAGATGAAGACAGAAAAAGAGAACTAA 1752 0.4686 MGEGEGGDCAPANVPSSSEEAAAGGVVAALDAPAKKLARQLDFTALSEQSQSQPQVVQQLQSVAPQPVTVLPSPPPPPPQAPLASVRVGKPESPKSKPRPNFEIKEATPKKQKQCNCKHSKCLKLYCECFASGIYCEGCNCVNCFNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSKEEAGEGLILVKHNKGCHCKKSGCLKKYCECFQANVLCSENCKCMDCKNFEGSEERQALFHGDQNNNVTYIQQAANAAITGAIGASGFSSPPVSKKRKGQELFFWPTVKDPSIGKLGQQVNHVKGPAPSPSLSPAPGARAGTAALGPSKFTYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLADQKNAMEKHTEDQMETSLAFSTQEQLPSQKEGDVQKAMADDCSSANQTEKISPDNSSSDGADVPKGRPMSPGTLALMCDEQDTMFMTASSPVGPATHACNTSSQFPYGQGMTEVYAEQERIVLTRFRDFLNRVITMGEINETKCSSLARSELENQNDPSSNGIGNTSTEIVHQQGATSNGVPKAVVPPVATTSASMIPENVVTENGEAKMKTEKEN* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2012 583 Coils Coil 577 583 - -
Lja2g2012 583 MobiDBLite consensus disorder prediction 68 84 - -
Lja2g2012 583 MobiDBLite consensus disorder prediction 369 441 - -
Lja2g2012 583 MobiDBLite consensus disorder prediction 407 426 - -
Lja2g2012 583 MobiDBLite consensus disorder prediction 558 583 - -
Lja2g2012 583 MobiDBLite consensus disorder prediction 1 23 - -
Lja2g2012 583 MobiDBLite consensus disorder prediction 382 397 - -
Lja2g2012 583 MobiDBLite consensus disorder prediction 67 103 - -
Lja2g2012 583 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 198 232 IPR005172 -
Lja2g2012 583 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 112 147 IPR005172 -
Lja2g2012 583 ProSiteProfiles CRC domain profile. 111 235 IPR005172 -
Lja2g2012 583 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 51 555 - -
Lja2g2012 583 SMART CXC_2 195 236 IPR033467 -
Lja2g2012 583 SMART CXC_2 110 150 IPR033467 -
Lja2g2012 583 PANTHER TESMIN/TSO1-RELATED 51 555 IPR028307 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2012 Lja-Chr2 21411991 21421293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2012 33 520 CPP Transcription Factor Family AT4G29000 56.430 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lja2g2012 TCR 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2012 - - gmx:100777698 837.41