Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2008 ATGGCTGATGCTCATGAGACTGAGAGTGTTAAGGTATGGAAAACAAAGAAATTGATTAAGGCTCTTGAGGCTGCAAGAGGAAATGGTACGAGTATGATTTCCCTGATCTTGCCCCCAGGTGATCAAATAGCTCGTGTTACTAAACTGCTTGGCGTTGAGTTTGGAACTGCTTCAAACATCGAAAACAAGGTGAATCGGCAATCTGTGTTGGGTGCAATCACTTCTGCTAAGCAGAGGCTTAAGCTTTATAACAAGGTTCCTGATAATGGACTTGTGTTGTATACCAGCACAATTATGACTGAAGATGGGAAGGAAAATAAGGTGGCCTTTAATTTTGAGCCATTCAAACCTATCAACGCGTTTCTCTATCGTTGTGACAACAGGTTTCACACAGAAGCTCTAAGTGAGCTTCTTTGTGAAACTGATGACATGTATGGATTTGTTGTCATGGGTCACAACAGAACTCTGTTTGGGACTTTGGGTGGTAATACAAGAAAAGTGCTTCATGAGTTTCGCATGGATTTCTCAATGTCAGTAGTACGACACCCAGATAACACGGAGAAGCGCCTTTTCTATGTGAACAAGGCTGCAGAGCTTGCAACCCACTTTTACATCAACCCTACTACCGGCCAACCAAATGTTTCAGGATTAATACTCGCTGCTTCGGCTGATTACATAACTGACCTTAGTCAGTCAGATGTGTTTGATCCTCGACTTAAGGCGAAAATACTTAATGTTGTTCAAATACATGATGGATGGGTTTTGGGGTTTAACCAGGCTATTGAATTATCTGCTGAAATTATGTCCCATGTAAAGTATATTCAGGAGAAAAAGTTGATTGGAAAATATTTTGAGGAAATCGGCCAGGATACTGGAAAGTATGCCATTGGTGTTGATGAAACTCTAAAAGCTCTGGAGATGGGAGCTATTGCGACACTTATTGTGTGGGAAAATCTGGATATATATAGGTATGTCTTAAAAAATGATGTTACTGGTGAGATTGTCATAAAGCACTACAACAACAAGGATTATGTGAGCTATGTTGCTGGTTATGAGGTTCAGGAAAAGATGCTTCTTGTAGATTGGTTATCAGAAGAATACCAACGGTATGGCTGCGTTCTTGAGTTTGTCACTGAAAAATCACAAGAAGGTGAACAATTTTGCAGAAGTTTGGATGGGATTGGGGGTATCTTGCAGTACAAACTCGAGTTTGGATCCTCTCGTTACCAATCCCATCCGGCCTCCACCGCGGAGATGCATGAGATATTCGTTAATTTATTTGATTAA 1287 0.4087 MADAHETESVKVWKTKKLIKALEAARGNGTSMISLILPPGDQIARVTKLLGVEFGTASNIENKVNRQSVLGAITSAKQRLKLYNKVPDNGLVLYTSTIMTEDGKENKVAFNFEPFKPINAFLYRCDNRFHTEALSELLCETDDMYGFVVMGHNRTLFGTLGGNTRKVLHEFRMDFSMSVVRHPDNTEKRLFYVNKAAELATHFYINPTTGQPNVSGLILAASADYITDLSQSDVFDPRLKAKILNVVQIHDGWVLGFNQAIELSAEIMSHVKYIQEKKLIGKYFEEIGQDTGKYAIGVDETLKALEMGAIATLIVWENLDIYRYVLKNDVTGEIVIKHYNNKDYVSYVAGYEVQEKMLLVDWLSEEYQRYGCVLEFVTEKSQEGEQFCRSLDGIGGILQYKLEFGSSRYQSHPASTAEMHEIFVNLFD* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2008 428 Gene3D eRF1 domain 2 142 270 IPR042226 -
Lja2g2008 428 SUPERFAMILY Translational machinery components 142 267 - -
Lja2g2008 428 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 12 401 IPR004403 GO:0003747|GO:0006415
Lja2g2008 428 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 7 138 IPR024049 -
Lja2g2008 428 Pfam eRF1 domain 3 273 402 IPR005142 -
Lja2g2008 428 Gene3D - 271 418 IPR029064 -
Lja2g2008 428 Gene3D eRF1 domain 1 1 138 IPR024049 -
Lja2g2008 428 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 406 IPR004403 GO:0003747|GO:0006415
Lja2g2008 428 Pfam eRF1 domain 2 145 269 IPR005141 -
Lja2g2008 428 Pfam eRF1 domain 1 17 137 IPR005140 -
Lja2g2008 428 SUPERFAMILY L30e-like 271 404 IPR029064 -
Lja2g2008 428 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 406 - -
Lja2g2008 428 SMART eRF1_1_2 4 139 IPR005140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2008 Lja-Chr2 21378523 21380678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2008 1 403 Eukaryotic Initiation Factors Gene Family AT1G12920 66.429 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2008 K03265 - vvi:100242471 556.984