Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1999 ATGATCGCGCACAGGGACTTGAAGCCTGGGAATTTGCTGATTTCCGATGATGGGATGCTCAAGTTGGCAGATTTTGGACAGGCAAGGATACTTATGGATACTGGATTTGATGCTACTGTGGAGAACCCACCACCACCATATGGATTCGATGCTTCGAATCTAGACAACTGGAACCAAACTGGATTTGGAAATCAAGAGGAGGGAACGGTGAGTCATGAGGAATATTTCAGAGATTCAAACATCCATGATGGTAACATCTCATGCCTTGCAACATGCACAACGAGTGACATAGATGATGATCTCTACATGGCTTTTTTTACCTACGAAGCAGAGGAGGGAGCAGGGAATGAACTCGGCTGTCTCACATCGTGTGTCGGAACTCAATGGTACAGGGCTCCTGAACTGCTTTACATATCCACAAACTACGGTTTGGAGGTTGATCTCTGGTCCGTGGGGTGCGTCTTCAAGGAGCTCTTGGCACTGAAGCCGTTGTTTTCTGGATCAACTGATATAGATCATCTGAGTAGAATTGTCAGTGTCTTGGGGGACCTCAATGAGGAAGCTTGGCCTGGTTGTTCCAAACTTCCTGATTATGCTGCAATCTCGTCGTTTATTAAAGGTGGATAG 627 0.4625 MIAHRDLKPGNLLISDDGMLKLADFGQARILMDTGFDATVENPPPPYGFDASNLDNWNQTGFGNQEEGTVSHEEYFRDSNIHDGNISCLATCTTSDIDDDLYMAFFTYEAEEGAGNELGCLTSCVGTQWYRAPELLYISTNYGLEVDLWSVGCVFKELLALKPLFSGSTDIDHLSRIVSVLGDLNEEAWPGCSKLPDYAAISSFIKGG* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1999 208 SUPERFAMILY Protein kinase-like (PK-like) 2 201 IPR011009 -
Lja2g1999 208 Gene3D Transferase(Phosphotransferase) domain 1 1 59 - -
Lja2g1999 208 Pfam Protein kinase domain 2 33 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1999 208 Pfam Protein kinase domain 121 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1999 208 Gene3D Transferase(Phosphotransferase) domain 1 121 198 - -
Lja2g1999 208 PANTHER CELL DIVISION PROTEIN KINASE 2 198 - -
Lja2g1999 208 SMART serkin_6 1 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1999 208 ProSitePatterns Serine/Threonine protein kinases active-site signature. 2 14 IPR008271 GO:0004672|GO:0006468
Lja2g1999 208 PANTHER CYCLIN-DEPENDENT KINASE 10 2 198 - -
Lja2g1999 208 ProSiteProfiles Protein kinase domain profile. 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1999 Lja-Chr2 21263031 21264121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1999 1 202 Core Cell Cycle Gene Families AT4G28980 53.219 1.51e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Lja2g1999 Pkinase 6.9e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1999 - - gmx:548056 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1999 2 21263031 21264121 Lja2g1999 2 21263031 21264121 ECH
Lja4g0198 4 1567089 1569168 Lja2g1999 2 21263031 21264121 PCT