Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1993 ATGAATAGAGGTGTTCTTCAAAGCTCCCCAGTGCAACAAATGATGGCTGGGAACCCTAACTGGTGGAATATCAATATCAATAGCATGAGGCCACCATCTCCACAACCACAAGCTCCTCCTTTCCTTCCCACTCCTTCCAACTTTCTCACCCCATATCCCCCTTCTTCTTCTTCTTCTCTTCCCTTTCCTTCTTGGCCAGAAAATCAAGAGGTTCCTGAGTCATGGAGCCAGCTACTCATGAGTGGAGTTGTGGCTGAAGAAGATAAGGGTGCTATGGCCCAGTTTCAGAATCAAATGCTAACTCAGGCTCCAAATGCTTCCTTTATTGATGTTAAACAAGAAAACTCGGGAAACAGCTATGTGTATGGGCATGGAAACGAAGAACTTCACTCAGCAAAGTCTTGTTGGTCTCCAAAATCCTGTGTGACAAGTTTTAGTAGCAACATGCTGGACTTCTCTAACAATAATAGGGATCATGTGAGGCTTCATCCACCACCAGATCTATCTTCTGAGTGCAACAGCACCCCTGCATCTGGTGGGGCAATGAAGAAAGCTAGGGTTCAACCCTCTACATCTCAACCTACCTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACTGCCCTTCATCAGTTAGTTTCCCCATTTGGGAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGTTTACCATACTTGAGCAGTGGATCAGGAAGCACGAGGCAGCAACAACAACAGCATGTCCAAGGAGAAAAGAATAGTATATTTCCTGAAGACCCAGGTCAGCTGCTAAATGAAAACGGCTTGAAGAGGAAAGCCACTGAAGGGCAGGATTCTCAAGAAGAGTCAAAGAAGGACCTGAGGAGCAGAGGTTTGTGTCTGGTTCCAGTGTCATGCACACTGCAAGTTGGGAGTGACAATGGAGCAGACTATTGGGCTCCTGCCTTTGGAGGGGGCTTTCAGTAA 1011 0.4609 MNRGVLQSSPVQQMMAGNPNWWNININSMRPPSPQPQAPPFLPTPSNFLTPYPPSSSSSLPFPSWPENQEVPESWSQLLMSGVVAEEDKGAMAQFQNQMLTQAPNASFIDVKQENSGNSYVYGHGNEELHSAKSCWSPKSCVTSFSSNMLDFSNNNRDHVRLHPPPDLSSECNSTPASGGAMKKARVQPSTSQPTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLSSGSGSTRQQQQQHVQGEKNSIFPEDPGQLLNENGLKRKATEGQDSQEESKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGFQ* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1993 336 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 322 - -
Lja2g1993 336 MobiDBLite consensus disorder prediction 165 194 - -
Lja2g1993 336 MobiDBLite consensus disorder prediction 250 280 - -
Lja2g1993 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Lja2g1993 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 248 IPR036638 GO:0046983
Lja2g1993 336 MobiDBLite consensus disorder prediction 250 267 - -
Lja2g1993 336 CDD bHLH_AtbHLH_like 194 244 IPR045239 -
Lja2g1993 336 PANTHER OS05G0228400 PROTEIN 16 322 - -
Lja2g1993 336 Gene3D - 195 265 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1993 Lja-Chr2 21145709 21150746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1993 1 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 43.466 1.15e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1993 - - gmx:100786555 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1993 2 21145709 21150746 Lja2g1993 2 21145709 21150746 ECH
Lja4g0201 4 1584802 1589090 Lja2g1993 2 21145709 21150746 PCT