Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1992 ATGTCTGTGCCATTGGAGCAAGGCTATGTAGGCATAGGAGAGGTTCATAATACAATGGAAGGCTCTGAGAAGTTTGCTGAAAGGACTAGCAGTGGCTTAAACCTCAAGGCTACTGAGCTCAGGCTTGGGTTGCCAGGCTCTGAGTCACCAGAGAGGGAACTTGGTGTGAGCATGCTCAAGAGTTTGGTGTCTGGGGCTAAAAGGGGTTTCTCAGATGCAATTGATGGAGGTTCTGGGAAGTGGGTTCTCTCTGGAAATGGTGGATCTGAAGTGGGTCTGGGTAAAGATTGTAGCTTGTTTTCCCCTAAGGGTGTTGGTGCTGCTGGGAAGGCTCTTGCTATTGCTGACTGCAACAAACAACAACAAGCATCTGTTGGGAAGGATAAAGTAACTCAGTCTATAAAGTCTCTGAATGAGAAGAAGGCACAGATATCTGCACCTGTTGCAAAGGAACAGGTTGTAGGATGGCCACCAATCCGCTCTTTCAGGAAGAACTCAATGACCTCTCAGCCTCAAAAGAATGATGGTGATGTAGAAGCCACATCTGGATGCCTTTATGTAAAAGTCAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTTAAACACTTTGTCACTTACAGGGATTTATCTTCTGCGCTGGAAAAGATGTTTAGTTGTTTTACTATCAGTCAATGTGGCTCTCATGGAGCTTCTAGTCATGACAAATTGAGTGAAAGTAGATTGATAGATCTCCTTCATGGTTCAGAATATGTCCTCACCTATGAAGACAAAGATGGTGACTGGATGCTGGTTGGTGATGTTCCATGGGTGATGTTTACTGACTCTTGCAAGAGGTTGAGGATAATGAAAAGTTCTGAAGCTATTGGACTTGTGATTCCTGCAGCACCAAGGTCTATGGAAAAGTGCAAGAGTCGCAACTAG 927 0.4498 MSVPLEQGYVGIGEVHNTMEGSEKFAERTSSGLNLKATELRLGLPGSESPERELGVSMLKSLVSGAKRGFSDAIDGGSGKWVLSGNGGSEVGLGKDCSLFSPKGVGAAGKALAIADCNKQQQASVGKDKVTQSIKSLNEKKAQISAPVAKEQVVGWPPIRSFRKNSMTSQPQKNDGDVEATSGCLYVKVSMDGAPYLRKVDLKHFVTYRDLSSALEKMFSCFTISQCGSHGASSHDKLSESRLIDLLHGSEYVLTYEDKDGDWMLVGDVPWVMFTDSCKRLRIMKSSEAIGLVIPAAPRSMEKCKSRN* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1992 308 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 26 297 IPR003311 GO:0005634|GO:0006355
Lja2g1992 308 SUPERFAMILY CAD & PB1 domains 182 285 - -
Lja2g1992 308 Gene3D - 178 297 - -
Lja2g1992 308 Pfam AUX/IAA family 38 292 IPR033389 -
Lja2g1992 308 ProSiteProfiles PB1 domain profile. 184 286 IPR000270 GO:0005515
Lja2g1992 308 PANTHER AUXIN-INDUCED PROTEIN 26 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1992 Lja-Chr2 21082300 21086284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1992 158 288 B3 DNA Binding Superfamily AT1G34170 28.676 3.93e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lja2g1992 AUX_IAA 1.8e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1992 K14484 - gmx:100803754 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1992 2 21082300 21086284 Lja2g1992 2 21082300 21086284 ECH
Lja4g0203 4 1616589 1619869 Lja2g1992 2 21082300 21086284 PCT