Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1986 ATGGAACGCATCATCGGCACCAAGTACAAGATGGGTCGCAAGATTGGAAGTGGATCCTTCGGTCAAATCTACCTCGCTACTCATATTGATACCTTCGAGAGCGTAGCTATCAAGATCGAGAAGAAAGACACAAAACATGCACAGTTGCTTTATGAGGCCAAGCTATACAATATTCTCCAAGGAGGAAGTGGCATCCCAAGTATAAAGTGGTGTGGTGTAGAGGGAGAGGACAACGTGCTTGTTATGGATTTGCTGGGGCCTAGTCTTGAGGATCTTTTTGTGTACTGTGGAAGAAAGTTTTCTCTCAAAACTGTATTGATGTTGGCTGATCAAATGATAACCAGAATAGAATATGTGCATTCTAAAGGATTCCTACATAGGGACATAAAACCTGATAACTTCCTCATGGGACTTGGTCGGAAGGCAAACCAGGTTTATGTAATTGATTTTGGGCTTGCAAAACGATATCGGGACTCCAGAACCAATTGCCACATCCCTTACAGGGAGAACAAAAGCTTAACAGGGACTGCACGTTATGCAAGTTGCAATACTCATCTTGGAATTGAGCAAAGCCGACGGGATGATTTGGTATCACTAGGATATGTGCTTCTGTATTTCCTCAGAGGAAGCCTTCCTTGGCAAAACCTAAAGGCCGCAACAAAGAAGCAAAAGTATGATCAAATATGTCAGAAGAAACTAGCAACTCCTATTGAGGTATTGTGCAAATCTTATCCTGTAGAGTTTGCTTCATACTTCCACTACTGTCACTCTCTGACCTTTGATCAGCGACCTGATTATGCATTCTTAAATCGCTTATTTCGGGAGTTATTTTCTCGGGAAGGTTATGAATTTGATTATGCATTTGATTGGTCTATTTTAAAGTATCAGCAGGCACAACAGAATAGAGTCCAGCCTCGTGTAACTCCGGTTCCTAGAGCAAGCAACAATCGTGCAGTGCCCATGAATGTTGGCAACTATCAAGGGGATGTCTCAGCAGAGCGCATTGAATCAGGCAATGCTACTGGGTCTGGTGTTAAAACTCAATTTAAATCACAAGTCGGTAAAACTTTGGGTTCTGAAAATCATCTTGACAAGAATATTTTCAGTGGAGCAAATATCCCCTCTACCTCGTACTCTCTTGCTGGTACCTCAAAAAGGAACTCCTTGAAGCCTGCCCTGTCGTCTGAAGCTGTGAACCCTGGACCTGGGCAAGGCAGTAGTAAAATGGGCCCTTCAAGTAGCTGGATTTCATCTCTGCATCGCAGATCTTCTGCCAAATGA 1281 0.4317 MERIIGTKYKMGRKIGSGSFGQIYLATHIDTFESVAIKIEKKDTKHAQLLYEAKLYNILQGGSGIPSIKWCGVEGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYVIDFGLAKRYRDSRTNCHIPYRENKSLTGTARYASCNTHLGIEQSRRDDLVSLGYVLLYFLRGSLPWQNLKAATKKQKYDQICQKKLATPIEVLCKSYPVEFASYFHYCHSLTFDQRPDYAFLNRLFRELFSREGYEFDYAFDWSILKYQQAQQNRVQPRVTPVPRASNNRAVPMNVGNYQGDVSAERIESGNATGSGVKTQFKSQVGKTLGSENHLDKNIFSGANIPSTSYSLAGTSKRNSLKPALSSEAVNPGPGQGSSKMGPSSSWISSLHRRSSAK* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1986 426 MobiDBLite consensus disorder prediction 303 323 - -
Lja2g1986 426 MobiDBLite consensus disorder prediction 381 426 - -
Lja2g1986 426 Gene3D Transferase(Phosphotransferase) domain 1 1 328 - -
Lja2g1986 426 PANTHER CASEIN KINASE-RELATED 1 405 - -
Lja2g1986 426 Pfam Protein kinase domain 9 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1986 426 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1986 426 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 405 - -
Lja2g1986 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lja2g1986 426 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1986 426 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lja2g1986 426 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1986 Lja-Chr2 20992564 20998916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1986 1 233 EF-hand Containing Proteins AT4G23650 28.631 1.73e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lja2g1986 Pkinase 6.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1986 K08960 - gmx:100805890 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1986 2 20992564 20998916 Lja2g1986 2 20992564 20998916 ECH
Lja4g0206 4 1627714 1633135 Lja2g1986 2 20992564 20998916 PCT