Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1983 ATGAACATTCAACTAGGTGTTGTTAGAATTTTGGTTCTCTCTATCTTGTTCATCCATGTTAGAGCACAAAGTGCAAATTCATCACCAGATGATGCTGTATCCAATTTCCAACCTAGCCTTGCTGTTGTCATAGGAATCCTCGGCGTCATGTTCTCGGTAACATTCGTTCTTCTCATGTTGGCGAAACTATGCAACCGCAACAGGATTTCGCATCCTCTTCATCAAAATCAACAAGCAACACTTTTAAGGTCAAGGTCAAGATTCTCAGGAATTGACAAGACTGTCATAGAATCACTCCCTTTCTTCAGATTCTCTTCCCTAAGAGGCTCAAAGGAAGGACTCGAATGCGCAGTGTGCCTATCAAAGTTTGAAGATGTTGAAATTCTCAGGCTTTTGCCAAAGTGCAAGCATGCTTTTCATATTGATTGCATAGACCACTGGCTTGAGAAACACTCAACATGTCCAATTTGCAGGCACAAGGTGAATCCTGAGGATCAGGCAACCTTCACTTACTCAAATAGTTTAAGGATGCAGCTAGCAAACCAATCAGGGCTTGGTGAAGATCAATCTAACATAGATATCTTTGTACAAAGAGAACAAGAAAATCATGGTTCTTCATCATCAAGGTTCAGTATTGGAGGCAGTTTTAGGAAAATTGGATTTGGAAAGGATGTTAAGGAAGAAGAGTTTCCTATTCAGAAAGTAGCAGAAGAAAAAAGTGATGATAGTTATCATAAACATAACCACAAGATTACTATATCTGATGTTGTGTTCAAGCATCGTTGGAGTAACGTGAGCTCTTCAGACCTCATGTTCCTGAATTCAGAGATCCTTCATGATCAATCAAGCAACAGATTCAACAACTTGGAGTCAAATGCAATAGATAATGAGCAAATTATGAACATCAAGGAAGAGATGGAGAGGAAAATTTCCTTTGAGAGTAAGTTTGGTGCAGGAAACAAGAACAAGACTAAATCAGTTTCAGATAACGATCCTCTTTTTGCATCAGATTCTGCAAGGAGTTTCAGTCATCATGGACAAAAGTATGTGAATCATGGTGAGAACAGATCAATGTCAGAAATCACTGCTGTGTCTAGATTTGGAAACTCTTCTTTTCCTGAAAACAATCATAAAGAGGAAAGACTGAGACAGCTTTGGTTTCCAATTGCAAGAAGAACAGCTGAATGGTTTGTAAATAGAGAAAGAAGGTCTCAGCAATCCCAGAATAAAGAACAACCATTAGATGTATAA 1251 0.3869 MNIQLGVVRILVLSILFIHVRAQSANSSPDDAVSNFQPSLAVVIGILGVMFSVTFVLLMLAKLCNRNRISHPLHQNQQATLLRSRSRFSGIDKTVIESLPFFRFSSLRGSKEGLECAVCLSKFEDVEILRLLPKCKHAFHIDCIDHWLEKHSTCPICRHKVNPEDQATFTYSNSLRMQLANQSGLGEDQSNIDIFVQREQENHGSSSSRFSIGGSFRKIGFGKDVKEEEFPIQKVAEEKSDDSYHKHNHKITISDVVFKHRWSNVSSSDLMFLNSEILHDQSSNRFNNLESNAIDNEQIMNIKEEMERKISFESKFGAGNKNKTKSVSDNDPLFASDSARSFSHHGQKYVNHGENRSMSEITAVSRFGNSSFPENNHKEERLRQLWFPIARRTAEWFVNRERRSQQSQNKEQPLDV* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1983 416 Pfam Ring finger domain 115 158 IPR001841 -
Lja2g1983 416 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 409 - -
Lja2g1983 416 SUPERFAMILY RING/U-box 95 164 - -
Lja2g1983 416 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Lja2g1983 416 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 409 - -
Lja2g1983 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 167 IPR013083 -
Lja2g1983 416 CDD RING-H2_PA-TM-RING 115 158 - -
Lja2g1983 416 SMART ring_2 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1983 Lja-Chr2 20952236 20954065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1983 7 405 C3H Transcription Factor Family AT4G28890 45.080 3.44e-104 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1983 K10664 - gmx:100803207 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1983 2 20952236 20954065 Lja2g1983 2 20952236 20954065 ECH