Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1982 ATGGGTTGCATTTATTCAAGGGTATGCATTGGTGACACTTGCAGAGGCTCAAGCGTCAATGGTGACCCAGTTGTGAGAACTGCCATAGGTGAAGCTGCTGAGTTCTCAGAAGCTTCTTCTGATGTTCAGGAAGGTGAAATCAGAGACCAGTTGAACCAATTGAGCTTGACCAGAGACCCTGAAGCTGGAATCAGAAGGCTTGCTAGGGTTTCAGCTCAGTTTCTTCCCCCTGATGGTTCAAGAGTAGTGAAGGTTCCTTCAAACAACTTTGAATTGCGTTACTCTTTCTTGTCTCAGCGTGGTTACTACCCTGATGCCCTTGATAAGGCTAACCAGGACAGTTTCTGCATTCATACCCCATTTGGGACTAACCCTGAGGACAATTTCTTTGGTGTTTTTGATGGGCATGGTGAATTCGGAGCGTTGTGTTCGCAGTTTGTGAAGCAGAAGGTGTGTGAGAATTTGCTGAGGAATTCTAAGCTTCATGTTGATGCTGTGGAGGCTTGTCATGCTGCTTTCTTGACCACGAATTCGCAGCTTCATGCTGATGTTTTGGATGATAGTATGAGTGGTACTACGGCGATCACGGTGTTGGTGAGGGGGAAGACGATGTATGTTGCGAATTGCGGGGATTCGAGGGCTGTGATTGCTGAGAGGAGAGGGAAGGATATTGTGGCGGTTGATTTGTCTGTTGATCAGACTCCTTTTAGGAATGATGAGCTTGAGAGGGTGAAGCTTTGTGGAGCTAGAGTGCTTACATTGGATCAGATTGAAGGGCTGAAGGACCCTGATGTTCAGTGTTGGGGGACTGAAGAGGATGATGATGGTGATCCTCCTAGGTTGTGGGTGCCTAATGGAATGTACCCGGGTACCGCTTTTACAAGGAGCATAGGGGATTCTATTGCTGAGACTATTGGGGTTGTTGCTAACCCTGAGATTGTTGTCTTTGAGCTCACACAGAACCACCCTTTTTTTGTGCTTGCCAGTGATGGGGTGTTTGAGTTTCTCTCTAGCCAGACAGTGGTTGAAATGGTTGCAAAGTTCAAAGATCCCCGTGATGCTTGTGCTGCAATAGTGGCAGAATCTTATCGACTTTGGCTACAGTATGAAACTCGTACAGATGATATTACAGTCATCATTGTGCACGTAAATGGGCTGACTGAACCTGCTGTTGGTCAGTCAGCAAGTTATGGTAATGTTTTCGCAACCACCATGCCTCAAGTTGTAGAGGTGACAGGATCTGAATCCCCTTCCACCGTTGGCTGGAATGCTAGGAACCCTCGTGTAAGGCATGACTTGTCAAGGGCACGCATCAGAGCAATTGAAAGTTCCCTAGAGAATGGACAAACATGGATTCCTCCATCTTCAGCCCACCGAAAGACATGGGAGGAAGAAGCACACATAGAACAGGCATTGCATGATCATTTTCTCTTCCGGAAGCTTACTGATTCTCAGTGTCATGTTTTATTGGATTGCATGCAAAGAGTTGAGGTACAACCTGGGGATATTATTGTCAAACAGGGTGGTGAAGGTGACTGTTTTTATGTTGTTGGCAGTGGAGAATTTGACGTCTTGGCAACTCAGGAGGAAAAGGATGGTGAGGTACCTAGGGTTTTGCAGCGCTACACAGCTGAAAAACTATCATGCTTTGGAGAACTTGCTTTAATGTATAATAAACCACTCCAGGCTTCTGTACGTGCTGTAACAGAAGGAACTCTTTGGGCTTTAAAGCGAGAAGATTTTCGAGGGATTTTAATGTCAGAATTCTCTAACTTATCTTCGTTAAAGTTGCTTCGGTCTGTAGATCTCCTCTCAAGGTTGTCAATTTTGCAACTGAGTCAGATTTCGGACTCCCTCTCTGAAGTTCCTTTCTCAAGTGGGCAAACAATAATTGATAAAAATGAAGTCCTTGCATTATACATTATCCAGAAGGGACAAGTGAAAATCACTTTTGATTCTGATTTATTGACAAGTCCAAATGCGTCCAGCCTCAAGCCTGACATCCAAAATGAGGATGGTGATGTACAGAGCATTGGAGAACTGTCAATAGAGAAGCCAGAGGGAAGCTATTTTGGCGAATGGGCACTTCTTGGTGAAAATATTGGCTCCTTGACTGCTGTTGCGGTGGGTGATGTTGTATGTGCTTTACTAACAAAGGACAAATTTGAATCAATTGTTGGCTCCGTGCAAAAGATTTCTCAGGAAGATCTCAAGTTGAGGGATGATTTCGAGTTGACTAGAAAAATTGAATTTTCATCCCTTGAGAATGCCCAGCTCTCAGATTTGGAGTGGAGAAAGACCCTATATTCAACTGATTGCTCTGAGATTGGGCTTGCAAGTTTAAGAGACTCAGATAATTTGCTTACCATGAAGAGGTTTTCTAAGCCAAAGGTGGAAAGGCTAGGAAAGGAATCACAAGTTTTGAAAGAGAAAGATTTGATCATGGGCATGAGCTCTTCAGTCTGTGTACCACAGGTTTTATGCACTTTTGCTGACCGCATATATGCTGGAATAGTGCTAAATACACACCTCGCTTGCCCTTTGTCTTCCATACTCTCAAGTCCTTTTAGTGAATCAGCAGCACAGTTTTGTGCTGCTTCTGTTGTTACTGCCTTAGAAGACTTGCACAAGAAAGGTGTTCTCTACAGAGGTGTGTCACCTGATGTTTTGATGTTGGAGCAAACAGGACAGATACAGCTGGTGGACTTCAGATTTGGAAAGAAGCTTTCTGATGAGAGAACATTCACAGTTTGTGGAATGGCAGATTCGCTAGCTCCTGAGATTGTTTTGGGAAAAGGACACGGTTTCCCTGCTGACTGGTGGGCGTTGGGAGTTTTAATATATTTTATGTTACGGGGTGAGATGCCATTCGGATCATGGAGAGAAAACGAACTTGATACAGTTGCCAAAATTGCAAAAAGGAAGCTACATCTTCCAGAGACTTTTAGTCCTGAAGCTGTGGATCTCATCTCCAAGTTACTTGAAGTAGATGAAAGCAACAGACTTGGTAGCCAAGGTCCTGATTCTGTCAAGAGTCACCCATGGTTTAATGGTATTGAATGGGAAGGGATTAGACACCACACTTTTCCTGTTCCGCAAGAAATTGTTTCTCGTATAGCGCAGTACTTGGAAGTTCGTTCTGACGACTGTACTGGTTCTCTGGGGCCCCCATTGCAGGAGGTAGAGGTAGAAGAACTTAATGTGCCTGAATGGCTTGAGGACTGGTAG 3228 0.4449 MGCIYSRVCIGDTCRGSSVNGDPVVRTAIGEAAEFSEASSDVQEGEIRDQLNQLSLTRDPEAGIRRLARVSAQFLPPDGSRVVKVPSNNFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGTNPEDNFFGVFDGHGEFGALCSQFVKQKVCENLLRNSKLHVDAVEACHAAFLTTNSQLHADVLDDSMSGTTAITVLVRGKTMYVANCGDSRAVIAERRGKDIVAVDLSVDQTPFRNDELERVKLCGARVLTLDQIEGLKDPDVQCWGTEEDDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVANPEIVVFELTQNHPFFVLASDGVFEFLSSQTVVEMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHVNGLTEPAVGQSASYGNVFATTMPQVVEVTGSESPSTVGWNARNPRVRHDLSRARIRAIESSLENGQTWIPPSSAHRKTWEEEAHIEQALHDHFLFRKLTDSQCHVLLDCMQRVEVQPGDIIVKQGGEGDCFYVVGSGEFDVLATQEEKDGEVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTEGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVPFSSGQTIIDKNEVLALYIIQKGQVKITFDSDLLTSPNASSLKPDIQNEDGDVQSIGELSIEKPEGSYFGEWALLGENIGSLTAVAVGDVVCALLTKDKFESIVGSVQKISQEDLKLRDDFELTRKIEFSSLENAQLSDLEWRKTLYSTDCSEIGLASLRDSDNLLTMKRFSKPKVERLGKESQVLKEKDLIMGMSSSVCVPQVLCTFADRIYAGIVLNTHLACPLSSILSSPFSESAAQFCAASVVTALEDLHKKGVLYRGVSPDVLMLEQTGQIQLVDFRFGKKLSDERTFTVCGMADSLAPEIVLGKGHGFPADWWALGVLIYFMLRGEMPFGSWRENELDTVAKIAKRKLHLPETFSPEAVDLISKLLEVDESNRLGSQGPDSVKSHPWFNGIEWEGIRHHTFPVPQEIVSRIAQYLEVRSDDCTGSLGPPLQEVEVEELNVPEWLEDW* 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1982 1075 Pfam Protein phosphatase 2C 120 362 IPR001932 -
Lja2g1982 1075 Pfam Protein kinase domain 779 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1982 1075 ProSiteProfiles cAMP/cGMP binding motif profile. 603 727 IPR000595 -
Lja2g1982 1075 Gene3D - 84 384 IPR036457 -
Lja2g1982 1075 Pfam Cyclic nucleotide-binding domain 622 726 IPR000595 -
Lja2g1982 1075 Pfam Cyclic nucleotide-binding domain 496 587 IPR000595 -
Lja2g1982 1075 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
Lja2g1982 1075 ProSiteProfiles cAMP/cGMP binding motif profile. 477 586 IPR000595 -
Lja2g1982 1075 PRINTS cAMP-dependent protein kinase signature 513 527 - -
Lja2g1982 1075 PRINTS cAMP-dependent protein kinase signature 498 512 - -
Lja2g1982 1075 PRINTS cAMP-dependent protein kinase signature 722 734 - -
Lja2g1982 1075 PRINTS cAMP-dependent protein kinase signature 548 557 - -
Lja2g1982 1075 CDD CAP_ED 477 586 IPR000595 -
Lja2g1982 1075 Gene3D Transferase(Phosphotransferase) domain 1 847 1032 - -
Lja2g1982 1075 Gene3D Jelly Rolls 593 742 IPR014710 -
Lja2g1982 1075 Gene3D Jelly Rolls 450 592 IPR014710 -
Lja2g1982 1075 SUPERFAMILY PP2C-like 81 385 IPR036457 -
Lja2g1982 1075 SUPERFAMILY cAMP-binding domain-like 444 587 IPR018490 -
Lja2g1982 1075 CDD CAP_ED 603 735 IPR000595 -
Lja2g1982 1075 SUPERFAMILY Protein kinase-like (PK-like) 758 1043 IPR011009 -
Lja2g1982 1075 CDD PP2Cc 109 383 IPR001932 -
Lja2g1982 1075 Gene3D Phosphorylase Kinase; domain 1 760 846 - -
Lja2g1982 1075 SUPERFAMILY cAMP-binding domain-like 596 734 IPR018490 -
Lja2g1982 1075 SMART serkin_6 770 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1982 1075 SMART PP2C_4 89 381 IPR001932 -
Lja2g1982 1075 ProSiteProfiles Protein kinase domain profile. 762 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1982 1075 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 36 1049 - -
Lja2g1982 1075 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 36 1049 - -
Lja2g1982 1075 ProSiteProfiles PPM-type phosphatase domain profile. 93 383 IPR001932 -
Lja2g1982 1075 SMART cnmp_10 477 600 IPR000595 -
Lja2g1982 1075 SMART cnmp_10 603 741 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1982 Lja-Chr2 20939992 20950074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1982 1 1075 PP2C-type Phosphatase Gene Family AT2G20050 67.274 0.0 1472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Lja2g1982 Pkinase 1.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1982 - - gmx:100799821 1884