Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1979 ATGGAGATAATAAAGAGCTGCGAAAACGTGGTTGATGTCGATAAAAGTGTGGATGTTGAGAAACGTCCTCCTAGCATTACTTTGGTTTGTATGGACCTCAGCGGTGGACAAGAAGCTATTCCCATTCCTGTTACCAATATGTATGATGATCCTCCCGTGGAACCAACTAGTTTCAAATATATCAAATCTATTCAAGTTGCAAGCAATGTGAAAGTCTCATCCCATACTGGTGGATGCAAGTGCAAAGGAAAAGGAAGTTGTAGGAGGTGTTCTTGTGCTCGCCTTAATGGCACCGAGTTTCCATATGCTCGTCATAATCATATTGATAGGTTGATTGAGCCTAGAGATATCGTGTTTGAATGTGGACCAAGTTGTGGTTGCGGACCTGATTGTGGCAATAGAGTTTCTCAGAAGGATTTACAGTACCGGCTTGAGGTTTTTCGTACAGTCAATAAAGGATGGGCTGTTAAAACATGGGACTTCATTCCTTCTGGCGCACCCGTTTTGGAATATATCGGTGTGCTTCGCAAAAATGAAGAGTTGGATACTGTATCTGTAAATGAATATATTTTTGAAATTGATTGTTTGCAAACAATCAATGAGGTAGAGGGGCGAGAGAGACGGTTGCATAATGTATCATTACCTGCAACCACTTGTGTTGAAAAAAGGAATGATGATGATGAGACAATGGAAAATGTTCCTGAGTTTTGCATAGATGCTCAGTCTTTGGGTAATGTTTCTAGGTTTATCAACCACAGTTGTGAGCCAAACCTTTTTGTGCAGTGTGTTCTGAGCTCCTACAATGATATCAGACTAGCTCGGGTGGTACTATTTGCTGGAGATGACATATACCCTTACCAGGAACTCACATATGACTATAATTACAAACTTGATAGCGTTATTGGTCCAGATAAAAAAATCAAGCAGTTACCGTGTCATTGTGGTGAGACTACATGTCGTAAGCGCTTGTACTAA 975 0.4072 MEIIKSCENVVDVDKSVDVEKRPPSITLVCMDLSGGQEAIPIPVTNMYDDPPVEPTSFKYIKSIQVASNVKVSSHTGGCKCKGKGSCRRCSCARLNGTEFPYARHNHIDRLIEPRDIVFECGPSCGCGPDCGNRVSQKDLQYRLEVFRTVNKGWAVKTWDFIPSGAPVLEYIGVLRKNEELDTVSVNEYIFEIDCLQTINEVEGRERRLHNVSLPATTCVEKRNDDDETMENVPEFCIDAQSLGNVSRFINHSCEPNLFVQCVLSSYNDIRLARVVLFAGDDIYPYQELTYDYNYKLDSVIGPDKKIKQLPCHCGETTCRKRLY* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1979 324 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 8 323 - -
Lja2g1979 324 Pfam Pre-SET motif 34 134 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja2g1979 324 SMART PostSET_3 308 324 IPR003616 -
Lja2g1979 324 ProSiteProfiles Pre-SET domain profile. 77 139 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja2g1979 324 SUPERFAMILY SET domain 23 303 IPR046341 -
Lja2g1979 324 ProSiteProfiles Post-SET domain profile. 308 324 IPR003616 -
Lja2g1979 324 SMART set_7 142 300 IPR001214 GO:0005515
Lja2g1979 324 Pfam SET domain 153 294 IPR001214 GO:0005515
Lja2g1979 324 Gene3D SET domain 25 324 IPR046341 -
Lja2g1979 324 SMART preset_2 30 126 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja2g1979 324 ProSiteProfiles SET domain profile. 142 294 IPR001214 GO:0005515
Lja2g1979 324 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 8 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1979 Lja-Chr2 20892782 20897354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1979 19 324 EF-hand Containing Proteins AT5G13960 59.683 1.58e-128 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja2g1979 SET 2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1979 K11420 - lja:Lj0g3v0265609.1 613.994