Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1976 ATGGGGGATTCACCACCACCAAACTCAGATACAGAGACAATAACTAGCAGCACAAACTGCGCTTCACCATGTTCACCATTGAGTTCAAGCTCAAGCAGCAAAACTGAAGAGAAGAGAGGGAACAAGAGAGGAAGAGATACCAGTACCAATACCAATAGCAAGCATCCAGTTTACAGAGGAGTCAGAATGCGCACGTGGGGAAAATGGGTATCCGAAATCCGGGAGCCACGCAAGAAGAACCGAATCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCGGCGCGTGCACACGACGCGGCGGCGCTCACCATCAAAGGCTCATCTGCCATCCTCAACTTCCCTGAACTCGCCGCCTCCCTGCCCCGGCCCGCCTCCAGCTCACCGCGTGACGTCCAGGCTGCCGCCGCCAAAGCGGCCTCCATGGTCACCATCTCCCCTCCATCTCCGGCGTCGTCGTCTGCTGCGTCGACGCCGGATGATGAGGACTTAGGGGAGATCGTGGAGCTGCCGTCGCTCGGGTCGAGCTTCGACTCGCCCGACCCCAGCGGCGGCGAGTTTGTGTTTTTTGACTCGGTTGATGGGTGGCCCTATCAATGGGATCATGGCATTTATGGTGAGGAACAAGGTGGGGGTGGGTACTTCAACACGATATCAATGCAAGACTCAGAGAGCATGGTCCTTTCATTGTGGTCTTGA 696 0.5704 MGDSPPPNSDTETITSSTNCASPCSPLSSSSSSKTEEKRGNKRGRDTSTNTNSKHPVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDAAALTIKGSSAILNFPELAASLPRPASSSPRDVQAAAAKAASMVTISPPSPASSSAASTPDDEDLGEIVELPSLGSSFDSPDPSGGEFVFFDSVDGWPYQWDHGIYGEEQGGGGYFNTISMQDSESMVLSLWS* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1976 231 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Lja2g1976 231 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Lja2g1976 231 SUPERFAMILY DNA-binding domain 57 115 IPR016177 GO:0003677
Lja2g1976 231 MobiDBLite consensus disorder prediction 144 158 - -
Lja2g1976 231 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 8 224 - -
Lja2g1976 231 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Lja2g1976 231 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Lja2g1976 231 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Lja2g1976 231 MobiDBLite consensus disorder prediction 35 49 - -
Lja2g1976 231 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Lja2g1976 231 MobiDBLite consensus disorder prediction 1 59 - -
Lja2g1976 231 MobiDBLite consensus disorder prediction 142 161 - -
Lja2g1976 231 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Lja2g1976 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 224 - -
Lja2g1976 231 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1976 Lja-Chr2 20855485 20856618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1976 27 204 AP2-EREBP Transcription Factor Family AT5G25810 54.774 9.51e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja2g1976 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1976 K09286 - gmx:100784134 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1976 2 20855485 20856618 Lja2g1976 2 20855485 20856618 ECH
Lja4g0216 4 1708859 1709837 Lja2g1976 2 20855485 20856618 PCT