LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g1975	ATGGGAAATCAGAAACAGAAGTGGACGGCTGAGGAAGAAGACGCCCTCCACCGCGGCGTCCAGAAGTACGGCGCCGGCAAGTGGAAGAACATCCTCAGAGATCCCGAATTCGCTCCTTCCCTCACGAGCCGTTCCAACATCGATCTCAAGGATAAATGGAGGAATTTAAATGTTGTCACTGGACAGGGCTCCAATATAAAGTCTAGAACTCTCAAGCACAAATTACCAGCACCTACTGCAGTTACAACTCCCGATCCTACTCTGCAATTCCTCCTCATATGTAGTTTGTATCATAGTATTTATTTTAGATTAGATACAAAAAGCAATATAAAATCTATAAATTCGTTTTCCAGCATATTGGATTTAAAAATGTACAATTTAAAGATTAATGCAGCAATTTCTGTTTCCATGTTAGGAGTAGAAGACTTTCAATGTAAGTGTCCATTTAGAATTTACAGATACACATTTAGACTTATAATTAGTTGCCAAGAGGGTGCAATCCTGTAG	507	0.4004	MGNQKQKWTAEEEDALHRGVQKYGAGKWKNILRDPEFAPSLTSRSNIDLKDKWRNLNVVTGQGSNIKSRTLKHKLPAPTAVTTPDPTLQFLLICSLYHSIYFRLDTKSNIKSINSFSSILDLKMYNLKINAAISVSMLGVEDFQCKCPFRIYRYTFRLIISCQEGAIL*	169

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g1975	168	PANTHER	TELOMERE REPEAT-BINDING FACTOR 4-RELATED	1	78	-	-
	Lja2g1975	168	ProSiteProfiles	Myb-like domain profile.	1	57	IPR001005	-
	Lja2g1975	168	PANTHER	SINGLE MYB HISTONE 4	1	78	IPR044597	GO:0003691
	Lja2g1975	168	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	56	IPR017930	-
	Lja2g1975	168	Pfam	Myb-like DNA-binding domain	5	56	IPR001005	-
	Lja2g1975	168	SUPERFAMILY	Homeodomain-like	2	58	IPR009057	-
	Lja2g1975	168	CDD	SANT_TRF	6	57	-	-
	Lja2g1975	168	SMART	sant	4	59	IPR001005	-
	Lja2g1975	168	Gene3D	-	8	83	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g1975	Lja-Chr2	20809421	20813609	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g1975	1	74	Single Myb Histone (SMH) Gene Family	AT1G17520	73.333	5.75e-30	108

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Lja2g1975		Myb_DNA-binding	6.4e-10	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g1975	K09422		-	jre:109002017	117.857