Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1954 ATGAGGAAAATAGATGAGGGAACCTCCTCCATATGCATCATTTTGAGATATGGTGATTGGATTGATTTAGTGCTCATGCTAATGGGTGCTTTGGGAGCAATAGGAGATGGCTTGCCCACAAACGTTTTGCTCCTGTTTGCTAGCCGTATCATGAACAGCTTAGGTTATAAAAATAACCAACAAGTTAGTGGCACTTCCATGACTGAGGTTGAAAAGTGCAGCTTATATTTTGTCTACTTGGGATTAGCAGCTATGGTGGTTGCTTTCATGGAAGGGTATTGTTGGAGCAAAACAAGTGAGAGGCAGGTGTTGAGAATTCGCTACAAGTATTTGGAAGCTGTCCTCCGACAAGAAGTGGGGTTTTTTGACTCACAAGAAGCAACTACTTCAGAAATCATTAATAGCATATCAAAGGACACTTCTCTTATACAAGAAGTTCTAAGTGAAAAGGTGCCCCTATTTTTAATGCACTCATCATCATTCATCTCTGGGGTTGCATTTGCCACCTACTTCTCATGGAGGCTGGCTTTAGTAGCATTCCCATCGCTGCTCCTGCTTATCATCCCCGGCATGATTTATGGCAAGTACCTCATCTACTTGTCAAAATCGTCTGTAAAAGAGTACGGCAAGGCAAACGCCATCGTTGAACAGGCCTTAAGCTCTATCAAAACAGTGTATTCGTTCACCGCGGAGAAGAGAATCATGGGGAGATATTCAGATATATTGGATAGAACTTCAAGGCTTGGGATTAAACAAGGCATAGCTAAGGGTCTTGCTGTGGGAAGCACAGGGATCTCTTTTGCAATATGGGCTTTTCTTGCTTGGTACGGGAGCCGTTTGGTCATGTACAAAGGTGAAAGTGGAGGAAGAATCTATGCAGCAGGCATTTCCTTCATCATGAGTGGACTATCCCTTGGAGTAGTACTTCCTGATTTGAAGTACTTCACGGAAGCATCAGTTGCAGCCTCACGCATATTTCATATGATTGACCGAACTCCACAAATTGATGGTGAAGACACAAAGGGACACATATTAGATACCATTAGTGGCAACCTTGATTTTGAGCATGTGAAATTCACATACCCTTCTCGTCCAGACACAGTTGTTCTTAACAATTTTAATCTCAAAGTGGAAGCAGGGAAAACCATTGCTCTAGTTGGTGCTAGTGGAAGTGGCAAATCCACTGCAATAGCATTACTGCAAAGATTCTATGATGCTGATGAAGGTGTTGTGAGGGTTGATGGTGTGGACATAAAGAGTTTGCAGTTGAAATGGATAAGAGGGAAAATGGGACTTGTGAGTCAAGAACATGCAATGTTTGGAACATCCATTAAGGAGAATATTGTGTTTGGGAAGCCTGATGCTACCATGGATGAAATTGTAGCTGCAGCTTCAGCAGCCAATGCTCATAACTTCATAAGGCAACTTCCTGAGGGTTATGAAACCAAGATTGGAGAAAAGGGAGCACTTCTTTCAGGAGGGCAAAAGCAGCGAATAGCCATTGCAAGGGCCATCATAAAGAATCCAGTAATTCTCCTACTTGATGAGGCAACCAGTGCTCTTGACTCTGAATCAGAATTACTAGTTCAGAATGCCCTAGATCAGGCCTCCATGGGGAGGACTACTTTGGTTGTTGCCCACAAGCTATCAACTATTAGAAATGCAGACCTCATAGCAGTTGTAAGTGGTGGTTGCATCATTGAAACTGGTACACACAATGAACTCATCAACTCTCCTAATGCCCACTATGCAAGACTTGCAAAACTACAAACACAATTGAGCATGGATGACCAGGACCAAAATCCAGAACCAGGTGTTTTTTCTTCAGCAAGAAGCAGTGCAGGTAGACCAAGCAGTGCAAGGTCAAGCCCTGCAATTTATCCAAAGTCACCATTGCCTGATGATATTACAACCACCCCATCTCCTGTTCCTCACCCTCCACCTTCATTTCCAAGGCTTCTATCTCTGAATTCCCCTGAATGGAAACAAGGTCTTATTGGAACCCTCTCAGCTATAGCCTTTGGCTCAGTTCAACCTCTATATGCTTTAACAATTGGTGGCATGATTTCTGCATTTTTTGCTGATAGCCATGAGGAAATGAGAAAAAGAATTAGGATGTATTCTCTAATTTTCTCTTTGCTATCACTTGCTTCTATTACCCTCAATGTCTTGCAACACTACAATTTTGCTTACATGGGAGCCAAGTTAACCAAAAGGATTAGATTGCACATGCTGGAGAAGATCTTAACCTTTGAAACTGCATGGTTTGATGAGGAGATAAACTCAAGTGGAGCATTGTGCTCAAGGTTGAGCCATGAGGCTTCCATGGTGAAGTCCCTTGTCGCGGACCGGCTCTGTTTGCTTGTTCAAACCACTTCAGCTGTCACCATTGCAATGATCATCGGGCTCGCCGTGGCGTGGAAGCTTGCTCTTGTCATGATAGCAGTACAGCCACTTGCAATCCTTTGCTTTTACACCAGAAAAGTATTACTCTCTACACTTTCAACCAAGTTTGTCAAGGCGCAGAATCGAAGCACGCAGATCGCAGTGGAGGCGGTTTATAATCATAGAATTGTGACATCATTTGGCAGCATCACAAAAGTTCTGAGACTGTTTGATGAGGCTCAAGAGGCACCAAGGAAGGAGGCGAGGAAGAAGTCTTGGCTAGCTGGTATTGGAATGGGTTCTGCTCAGTGCCTAACTTTCATGACATGGGCTTTGGATTTCTGGTATGGTGGTAGTTTGGTTGGAAAGGGAGAAATCTCAGCAGGGGATGTGTTCAAAACATTTTTTGTGTTGGTGAGCACTGGCAAGGTCATAGCTGAAGCTGGAAGCATGACTTCTGACCTTGCTAAGAGCTCAACAGCAGTAGCATCCATATTTGAAATCCTTGACAGGAAATCACTAATTCCTAAGGTTGGAGATAGCATTAATGGCATTAAGTTGGAAAAGATGAGTGGAAAGATAGAGTTGAAGAATGTTGATTTTGCTTATCCAAGCAGGGCAAGGACTCCGATTCTGCGCAAGTTTTGCTTGGAGGTGAAGCCAGGAAAGAGTGTTGGTCTAGTTGGGAAAAGTGGATGTGGGAAATCAACAGTGATTGCCTTGATTCAGAGATTCTATGATGTTGAGAGAGGTTCAGTGAAAGTGGATAACGTGGACATAAGGGAATTAGACATCCACTGGTACAGGCAACACACTGCACTCGTAAGCCAAGAACCTGTGATATATTCTGGCAGCATAAGGGACAACATTTTGTTTGGGAAGCAAGATGCAACAGAGAACGAAGTGGTTGAGGCTGCAAGAGCTGCAAATGCTCATGAATTCATATCATCACTGAAAAATGGATATGAAACTGAATGTGGAGAAAGGGGAGTACAATTATCAGGGGGGCAAAAGCAGAGAATAGCAATAGCAAGGGCCATAATTCGAAACCCAATGATACTGCTACTAGATGAGGCAACAAGTGCTTTGGATGTGCAATCAGAACAAGTGGTGCAAGAGGCACTAGATAGGACCATGGTTGGAAGAACTACCATTGTTGTGGCACACAGGCTTAACACCATCAAAGAGCTTGACTCAATTTCCTATGTGTCAGAAGGCAAGGTTCTGGAGCAAGGAACATATTCTCAACTTAGGCACAAGAGAGGTGCATTTTTTAACCTTGCCAGCTATCAAATCCAAACTTAG 3690 0.4336 MRKIDEGTSSICIILRYGDWIDLVLMLMGALGAIGDGLPTNVLLLFASRIMNSLGYKNNQQVSGTSMTEVEKCSLYFVYLGLAAMVVAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDSQEATTSEIINSISKDTSLIQEVLSEKVPLFLMHSSSFISGVAFATYFSWRLALVAFPSLLLLIIPGMIYGKYLIYLSKSSVKEYGKANAIVEQALSSIKTVYSFTAEKRIMGRYSDILDRTSRLGIKQGIAKGLAVGSTGISFAIWAFLAWYGSRLVMYKGESGGRIYAAGISFIMSGLSLGVVLPDLKYFTEASVAASRIFHMIDRTPQIDGEDTKGHILDTISGNLDFEHVKFTYPSRPDTVVLNNFNLKVEAGKTIALVGASGSGKSTAIALLQRFYDADEGVVRVDGVDIKSLQLKWIRGKMGLVSQEHAMFGTSIKENIVFGKPDATMDEIVAAASAANAHNFIRQLPEGYETKIGEKGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVVSGGCIIETGTHNELINSPNAHYARLAKLQTQLSMDDQDQNPEPGVFSSARSSAGRPSSARSSPAIYPKSPLPDDITTTPSPVPHPPPSFPRLLSLNSPEWKQGLIGTLSAIAFGSVQPLYALTIGGMISAFFADSHEEMRKRIRMYSLIFSLLSLASITLNVLQHYNFAYMGAKLTKRIRLHMLEKILTFETAWFDEEINSSGALCSRLSHEASMVKSLVADRLCLLVQTTSAVTIAMIIGLAVAWKLALVMIAVQPLAILCFYTRKVLLSTLSTKFVKAQNRSTQIAVEAVYNHRIVTSFGSITKVLRLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMTWALDFWYGGSLVGKGEISAGDVFKTFFVLVSTGKVIAEAGSMTSDLAKSSTAVASIFEILDRKSLIPKVGDSINGIKLEKMSGKIELKNVDFAYPSRARTPILRKFCLEVKPGKSVGLVGKSGCGKSTVIALIQRFYDVERGSVKVDNVDIRELDIHWYRQHTALVSQEPVIYSGSIRDNILFGKQDATENEVVEAARAANAHEFISSLKNGYETECGERGVQLSGGQKQRIAIARAIIRNPMILLLDEATSALDVQSEQVVQEALDRTMVGRTTIVVAHRLNTIKELDSISYVSEGKVLEQGTYSQLRHKRGAFFNLASYQIQT* 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1954 1229 MobiDBLite consensus disorder prediction 596 625 - -
Lja2g1954 1229 Pfam ABC transporter 1010 1156 IPR003439 GO:0005524
Lja2g1954 1229 CDD ABC_6TM_Pgp_ABCB1_D1_like 26 325 - -
Lja2g1954 1229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 352 588 IPR003439 GO:0005524
Lja2g1954 1229 SMART AAA_5 1016 1208 IPR003593 -
Lja2g1954 1229 SMART AAA_5 379 571 IPR003593 -
Lja2g1954 1229 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 12 1226 IPR039421 -
Lja2g1954 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 981 1226 IPR027417 -
Lja2g1954 1229 CDD ABC_MTABC3_MDL1_MDL2 353 590 - -
Lja2g1954 1229 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 665 952 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g1954 1229 MobiDBLite consensus disorder prediction 635 650 - -
Lja2g1954 1229 CDD ABC_6TM_Pgp_ABCB1_D2_like 654 970 - -
Lja2g1954 1229 SUPERFAMILY ABC transporter transmembrane region 22 336 IPR036640 GO:0005524|GO:0016021
Lja2g1954 1229 Gene3D - 342 591 IPR027417 -
Lja2g1954 1229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 989 1225 IPR003439 GO:0005524
Lja2g1954 1229 Pfam ABC transporter transmembrane region 42 290 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g1954 1229 Pfam ABC transporter transmembrane region 666 935 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g1954 1229 SUPERFAMILY ABC transporter transmembrane region 647 966 IPR036640 GO:0005524|GO:0016021
Lja2g1954 1229 Gene3D ABC transporter type 1, transmembrane domain 14 894 IPR036640 GO:0005524|GO:0016021
Lja2g1954 1229 Gene3D - 979 1229 IPR027417 -
Lja2g1954 1229 CDD ABC_MTABC3_MDL1_MDL2 989 1226 - -
Lja2g1954 1229 PANTHER ABC TRANSPORTER B FAMILY MEMBER 8-RELATED 12 1226 - -
Lja2g1954 1229 Pfam ABC transporter 370 519 IPR003439 GO:0005524
Lja2g1954 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 590 IPR027417 -
Lja2g1954 1229 ProSitePatterns ABC transporters family signature. 491 505 IPR017871 GO:0005524
Lja2g1954 1229 ProSitePatterns ABC transporters family signature. 1128 1142 IPR017871 GO:0005524
Lja2g1954 1229 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 27 317 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja2g1954 1229 MobiDBLite consensus disorder prediction 596 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1954 Lja-Chr2 20541990 20550306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1954 14 1226 Calmodulin-binding Proteins AT2G36910 42.731 0.0 955
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1954 K05658 - gmx:100801088 2079.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1954 2 20541990 20550306 Lja2g1954 2 20541990 20550306 ECH