Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1948 ATGACAATACCAGCACCTCTATCCCTTGTTCAATTAACAATTTACTCTCTTCTAACCTCCTTTCTCATCCTGAGCCATGCAGGCTCTGTCTCTCAGTCTCAGCTTCATGCTCAAGAACATGCAGTCCTACTGAATATAAAGCTCCACCTGCAAAATCCACCATTCCTCACTCACTGGACCTCATCAAACACCTCCCACTGCTTATGGCCAGAGATCACCTGCACCAGAGGCTCTGTCACCGGGTTGACTCTGGTCAACGCCAGCATCACTCAAACCATACCACCTTCCCTATGTAACCTCACAAACCTCACACACGTTGACTTCAGCAAGAATTTCATTCCTGGTGGTTTCCCAACATCTCTCTACAAGTGCTCCAAGCTGGAGTACCTCGACCTTTCGATGAACAACTTTGTTGGTTTCATTCCTCATGACATTCACCGCTTGGTTAACCTGCAACACCTTAATCTCGGTTCAACAAACTTCACTGGTGACATTCCCGCGAGTGTTGGAGCTTTGAAGGAACTGAGATACCTCCAACTTCAGTATTGTCTGCTTAATGGAACTTTCCCTGATGAGGTTGGTAACTTGCTCAATCTTGAATTCTTGGACGTGTCTTCTAATTTTTTGCTCCCTTCAAGGATTCCATCAAGCTTAACCAGGTTGAACAAGCTGAGATTCTTTCATATGTTTGGTTCGAACTTGGTAGGGGAAATCCCTGAAGCCATTGGAGGAATGGTGGCATTGGAGAATTTGGATATATCTCAAAACAATTTAACTGGAAAAATTCCCAGTGGTTTGTTCATGCTGAAGAATCTGAGCATACTGTATCTTTACAATAACAATCTTTCTGGGGAAATACCTGGTATGGTTGAAGCATTGAATTTGACTGACCTTGATATTTTACAGAACAACCTTTCTGGGAAAATACCAGAAGATTTTGGAAAGCTCCAAAAGTTAACTAGGTTGAGTTTGTCTATGAATAGCTTGTCAGGGGAGGTACCGAAAAGCATAGGTCGTCTTCAATCTCTGATATACTTTCATGTATTCATGAACAACTTGTCAGGTACTCTACCTTCTGACTTTGGCTTGTACTCAAAGCTTGAGTCTTTTCAAGTTGCATCTAACAATTTCAAGGGAAGGTTGCCAGAGAACTTGTGTTATCATGGTGAGTTGTTTAATTTAACTGTTTATGAAAATCATTTCACTGGGGAGTTGCCAGAATCACTTGGAAATTGCAGTAGCCTACTTGATCTGAAAGTTTATAGTAATGAGTTTTCTGGTAACATTCCTAGTGGTCTTTGGACTTCCAATTTGGTTAATTTCATGGCAAGCTATAATAATTTCACTGGTGAGCTTCCTGAAAGACTGTCTTCAAGTATTTCACGCGTTGAGATAAGCTACAATAATTTTTATGGTAGAATTCCAAGGGAAGTATCTTCATGGAAGAATGTGGTAGAATTTAAAGCCAGTAAGAACTACCTTAATGGAAGTATTCCTCAAGAGCTAACAGCTCTTCCCAAGCTAACAAAGCTGTTGCTTGATCAGAACCAGCTCAATGGGCCACTTCCATCACATTTAATATCTTGGAAGTCACTAGTGACTCTAAATTTGAGCCATAACCAACTCTCTGGACAAATCCCAGCTTCAATTGGTCTTTTAGTTGTCCTTAGTGAGCTTGACCTGTCAGAAAATCAATTCTCTGGCCAAATTCCGGCTATACTTCCCAGAATCACCAAGCTCAATCTATCCTCCAATTTTTTGACTGGGGAGATCCCAATTGAGCTTGAAAATTCTGTGGATTCCACCAGCTTTTTGAACAATTCTGGCCTCTGTTCTGATACCCCATTGCTAAACCTTACCTTGTGCAATTCTAGCCTTCAAAACCCAACCAAAGGCTCATCTTGGTCTCCTTTTTTGGTTACAATCCTGGTGGTTGTAGCATTTTTACTGGCTTTATCAGCATCCCTCCTGATTATCAAACTTCACAGAAAAAGAAAGCAAGGATTGGAGAATTCATGGAAGCTCATTTCCTTTCAAAGGTTGAGTTTCACAGAATCAAACATAGTGTCCTCAATGACAGAACATAATATCATTGGCAGTGGTGGATTTGGGACAGTATACCGTGTTGCTGTTGATGGTTTAGGCTATGTTGCTGTGAAAAAGATCTCGGGTGACAGAAAGTTAGACCGAAAGCTCGAGACTTCATTTCATGCAGAGGTTAAAATATTGAGCAATATTCGGCATAACAACATTGTGAAGTTGCTGTGCTGTATCTCTAAAGAGGACTCTTTGCTCCTTGTGTATGAGTATTTGGAAAACCATAGCCTAGATAGGTGGCTGCATAAGAGTGATTCATCCGCTGTTTTTCCGGGTTCAACCCATCATGTTGTCCTTGATTGGCCAAAGAGACTGCGAATAGCCATTGGGGTTGCCCATGGTTTGTGCTACATGCACCATGATTGTTCACCCCCTATTGTTCATCGAGATATAAAGACAAGCAACATCCTTTTGGATACTGGATTCAATGCAAAAGTTGCTGATTTTGGTCTGGCTAGGATGTTAATGAAGTCGGGGCAATTTAACACCATGTCAGCTGTTATTGGCTCATTTGGCTACATGGCACCAGAATATGTTCAGACAACTCGAGTCAGTGTAAAGGTTGATGTCTATAGCTTTGGGGTTGTCCTGTTGGAACTTGCAACTGGTAAAGAGGCTAATTATGGTGATGAGCACTCATCTCTTGCAGAATGGGCGTGGCGCCATGTTCATGTAGGAAGCAATATAGAAGAGTTGCTAGACCATGATTTCGTGGAACCTAGTTGCTTGGATGAAATGTGCTGCGTTTTTAAACTTGGGATCATGTGCACTGCAATACTTCCTGCAAGCAGGCCTTCCATGAAGGAGGTCGTAAACATATTGCTTCGCTGCGAAGAAGGATTTAGTTCTGGGGAGAGGAATCTTGGACTTGGGTATGATGCTGTTCCATTGCTTAAGAATTCAAAACGGGAGAGTAGGTTGCATGTTGTTGATAGTGATAGTGACTAA 3045 0.4177 MTIPAPLSLVQLTIYSLLTSFLILSHAGSVSQSQLHAQEHAVLLNIKLHLQNPPFLTHWTSSNTSHCLWPEITCTRGSVTGLTLVNASITQTIPPSLCNLTNLTHVDFSKNFIPGGFPTSLYKCSKLEYLDLSMNNFVGFIPHDIHRLVNLQHLNLGSTNFTGDIPASVGALKELRYLQLQYCLLNGTFPDEVGNLLNLEFLDVSSNFLLPSRIPSSLTRLNKLRFFHMFGSNLVGEIPEAIGGMVALENLDISQNNLTGKIPSGLFMLKNLSILYLYNNNLSGEIPGMVEALNLTDLDILQNNLSGKIPEDFGKLQKLTRLSLSMNSLSGEVPKSIGRLQSLIYFHVFMNNLSGTLPSDFGLYSKLESFQVASNNFKGRLPENLCYHGELFNLTVYENHFTGELPESLGNCSSLLDLKVYSNEFSGNIPSGLWTSNLVNFMASYNNFTGELPERLSSSISRVEISYNNFYGRIPREVSSWKNVVEFKASKNYLNGSIPQELTALPKLTKLLLDQNQLNGPLPSHLISWKSLVTLNLSHNQLSGQIPASIGLLVVLSELDLSENQFSGQIPAILPRITKLNLSSNFLTGEIPIELENSVDSTSFLNNSGLCSDTPLLNLTLCNSSLQNPTKGSSWSPFLVTILVVVAFLLALSASLLIIKLHRKRKQGLENSWKLISFQRLSFTESNIVSSMTEHNIIGSGGFGTVYRVAVDGLGYVAVKKISGDRKLDRKLETSFHAEVKILSNIRHNNIVKLLCCISKEDSLLLVYEYLENHSLDRWLHKSDSSAVFPGSTHHVVLDWPKRLRIAIGVAHGLCYMHHDCSPPIVHRDIKTSNILLDTGFNAKVADFGLARMLMKSGQFNTMSAVIGSFGYMAPEYVQTTRVSVKVDVYSFGVVLLELATGKEANYGDEHSSLAEWAWRHVHVGSNIEELLDHDFVEPSCLDEMCCVFKLGIMCTAILPASRPSMKEVVNILLRCEEGFSSGERNLGLGYDAVPLLKNSKRESRLHVVDSDSD* 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1948 1014 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Lja2g1948 1014 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Lja2g1948 1014 Gene3D Ribonuclease Inhibitor 531 612 IPR032675 -
Lja2g1948 1014 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 18 1005 - -
Lja2g1948 1014 Gene3D Ribonuclease Inhibitor 293 526 IPR032675 -
Lja2g1948 1014 Pfam Protein kinase domain 694 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1948 1014 SUPERFAMILY RNI-like 293 600 - -
Lja2g1948 1014 Pfam Leucine rich repeat N-terminal domain 37 74 IPR013210 -
Lja2g1948 1014 Gene3D Ribonuclease Inhibitor 36 184 IPR032675 -
Lja2g1948 1014 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 18 1005 - -
Lja2g1948 1014 SUPERFAMILY Protein kinase-like (PK-like) 685 973 IPR011009 -
Lja2g1948 1014 ProSiteProfiles Leucine-rich repeat profile. 531 553 IPR001611 GO:0005515
Lja2g1948 1014 SUPERFAMILY L domain-like 50 375 - -
Lja2g1948 1014 ProSiteProfiles Protein kinase domain profile. 692 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1948 1014 SMART serkin_6 692 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1948 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672|GO:0006468
Lja2g1948 1014 Gene3D Ribonuclease Inhibitor 185 292 IPR032675 -
Lja2g1948 1014 Gene3D Transferase(Phosphotransferase) domain 1 771 985 - -
Lja2g1948 1014 SMART LRR_typ_2 148 172 IPR003591 -
Lja2g1948 1014 SMART LRR_typ_2 530 553 IPR003591 -
Lja2g1948 1014 SMART LRR_typ_2 245 269 IPR003591 -
Lja2g1948 1014 SMART LRR_typ_2 196 221 IPR003591 -
Lja2g1948 1014 SMART LRR_typ_2 505 529 IPR003591 -
Lja2g1948 1014 SMART LRR_typ_2 316 340 IPR003591 -
Lja2g1948 1014 SMART LRR_typ_2 574 598 IPR003591 -
Lja2g1948 1014 CDD STKc_IRAK 698 975 - -
Lja2g1948 1014 Gene3D Phosphorylase Kinase; domain 1 669 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1948 Lja-Chr2 20489798 20493627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1948 39 1012 Receptor kinase-like Gene Family AT5G25930 49.089 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja2g1948 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1948 - - gmx:100819744 1436.01